View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8405_high_3 (Length: 380)
Name: NF8405_high_3
Description: NF8405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8405_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 17479562 - 17479900
Alignment:
| Q |
1 |
tctccactatcttctgttccaaggcgttgaattcgtctacatattttgatatggaattcattctcccagctctgatattcaaaagaatttgatgtaaaca |
100 |
Q |
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| T |
17479562 |
tctccactatcttctgttccaaggcgttgaattcatctacatatttttctatggaattcattctcccagctctgatatttaaaagaatttgatgtaaa-- |
17479659 |
T |
|
| Q |
101 |
gtaacaccgtaagcacatcacagtaaatcatgtgcttgactttaaaatacagaccagaaaagccttctgtcatgtttgacattcacacagtcgacactta |
200 |
Q |
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| T |
17479660 |
--------------------cagtaaatcatgtgcttgactttaaaatacagaccagaaaagccttctgtcatgtttgacattcacacagtcgacactta |
17479739 |
T |
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| Q |
201 |
catggttcttggatcacaattggaccgtctagattacaagttcggtaattttctacttaaaaataataattagtaactacaatgaaatctaggctatgtg |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |
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| T |
17479740 |
catggttcttggatcacaattggaccgtttagattacgagctcggtaattttctacttaagaataatacttagtaactacaatgaaatataggctatgtg |
17479839 |
T |
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| Q |
301 |
actccgatctcgatccaacgaccacaaatgtgttgaatgcggcaaatctttgaccacaagc |
361 |
Q |
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| T |
17479840 |
actccgatctcgatccaacgaccacaaatgtgttgaatgcggcaaatccttgaccacaagc |
17479900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36903504 - 36903465
Alignment:
| Q |
1 |
tctccactatcttctgttccaaggcgttgaattcgtctac |
40 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| |
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| T |
36903504 |
tctcaactatcttctgttccaacgcgttgaattcgtctac |
36903465 |
T |
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