View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8405_high_4 (Length: 337)
Name: NF8405_high_4
Description: NF8405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8405_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 14774509 - 14774207
Alignment:
| Q |
16 |
tttatcactcaatttgaaaagtattctgaggatcaaatttgccttagttttacatgatgtatgactatatgtctggtctgtgtatcttttcaatgtatat |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
14774509 |
tttatcactcaatttgaaaagtattctgagaatcaaatttgcctcagttttacatgatgtat-------tgtctggtctgtgtatcttttcaatgcatat |
14774417 |
T |
|
| Q |
116 |
agcatttaatttgcatcactgttgatttatattatgtgttttccgaacagtgggcactcatggcacttctaaacccaatatttagtgtggagaacttggt |
215 |
Q |
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| T |
14774416 |
aggatttaatttgcatcaccgttgatttatattatgtgttttctgaacagtgggcactcatgacacttctaaacccaatctttagtgtggagaacttggt |
14774317 |
T |
|
| Q |
216 |
atacatgggttttcctggtgatccgtcatctgctgtctgtgtgactaggaggcgacatgtggatcgcaaaaaacaacattcagaaagaaatgtcttgcag |
315 |
Q |
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| T |
14774316 |
atacatgggttttcatggtaatccgtcatctgctatctgtgtgactaggaggcgacatgtggatcgcaaaaaacaacattcagaaagaaatgtcttgcag |
14774217 |
T |
|
| Q |
316 |
tgcttcatct |
325 |
Q |
| |
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|||||||||| |
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| T |
14774216 |
tgcttcatct |
14774207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 15016592 - 15016282
Alignment:
| Q |
15 |
atttatcactcaatttgaaaagtattctgaggatcaaatttgccttagttttacatgatgtatgactatatgtctggtctgtgtatcttttcaatgtata |
114 |
Q |
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|||||||||| |||||||||||||| |||| |||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||| || ||| |
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| T |
15016592 |
atttatcactatatttgaaaagtattttgagaatcatggttgcctcagttttacatgatgtatgactgtacgtctggtctgtgtatcttttccctgcata |
15016493 |
T |
|
| Q |
115 |
tagcatttaatttgcatcactgttgattt--atattatgtgttttccgaacagtgggcactcatggcacttctaaacccaatatttagtgtggagaactt |
212 |
Q |
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| T |
15016492 |
tagtattttatttgcatcaccgctgatttttatattatatgttttccaaacagtgggcactcatgacacttctaaacccgacctttagtgtggagaatct |
15016393 |
T |
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| Q |
213 |
ggtatacatgggttttcctggtgatccgtcatctgctgtctgtgtgactaggaggcgacatgtggatcgcaaaaaacaacattcagaaagaaatgtcttg |
312 |
Q |
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| | ||||| |||| |||||||||||| ||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |
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| T |
15016392 |
gatgtacattggttatcctggtgatccatcatctgctatccgtgtgactaggaggcgacacatggatcgcagaaaacaacattcagaaagaaatgtattg |
15016293 |
T |
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| Q |
313 |
cagtgcttcat |
323 |
Q |
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||||||||||| |
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| T |
15016292 |
cagtgcttcat |
15016282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 323
Target Start/End: Complemental strand, 17881764 - 17881499
Alignment:
| Q |
61 |
agttttacatgatgtatgactatatgtctggtctgtgtatcttttcaatgtatatagcatttaatttgcatcactgttgatttatat----tatgtgttt |
156 |
Q |
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||||||||||||||||||||| || |||||||||||| || ||| || | || ||||||||| |||||| || |||| || ||| ||| ||||| |
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| T |
17881764 |
agttttacatgatgtatgactgtacgtctggtctgtgcatattt-cagtacatgcagcatttaacttgcattaccattgaattttataacatatatgttt |
17881666 |
T |
|
| Q |
157 |
tccgaacagtgggcactcatggcacttctaaacccaatatttagtgtggagaacttggtatacatgggttttcctggtgatccgtcatctgctgtctgtg |
256 |
Q |
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| | |||||||||||||||| |||||||||| |||| ||||||||||||||| || ||| ||| |||| |||||||||||| |||||||| || ||| |
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| T |
17881665 |
tttggacagtgggcactcatgacacttctaaatccaacctttagtgtggagaacctgatatgcattggttatcctggtgatccatcatctgcgatccgtg |
17881566 |
T |
|
| Q |
257 |
tgactaggaggcgacatgtggatcgcaaaaaacaacattcagaaagaaatgtcttgcagtgcttcat |
323 |
Q |
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||||||||| |||| | |||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
17881565 |
tgactaggatgcgaaacatggatcgccaaaaacaacattcagaaagaaatgtattgcagtgcttcat |
17881499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 315
Target Start/End: Complemental strand, 15048890 - 15048738
Alignment:
| Q |
162 |
acagtgggcactcatggcacttctaaacccaatatttagtgtggagaacttggtatacatgggttttcctggtgatccgtcatctgctgtctgtgtgact |
261 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |||||||||||| | | || |||| |||| || |||||||| || |||||| || ||||||| |
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| T |
15048890 |
acagtgggcactcatgacacttctaaacccaacccttagtgtggagagccttataaacattggttaccc-ggtgatccatcgtctgctatccatgtgact |
15048792 |
T |
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| Q |
262 |
aggaggcgacatgtggatcgcaaaaaacaacattcagaaagaaatgtcttgcag |
315 |
Q |
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|||||| |||| ||||| ||||||||||||||| ||||||||||| |||||| |
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| T |
15048791 |
aggaggagacacatggattacaaaaaacaacattcggaaagaaatgtgttgcag |
15048738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 15049314 - 15049255
Alignment:
| Q |
84 |
atgtctggtctgtgtatcttttcaatgtatatagcatttaatttgcatcactgttgattt |
143 |
Q |
| |
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|||||||||||||||||||||||| ||| | || ||||| ||||||||||| ||||||| |
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| T |
15049314 |
atgtctggtctgtgtatcttttcagtgtgtgtatcatttcatttgcatcacaattgattt |
15049255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 36875753 - 36876065
Alignment:
| Q |
16 |
tttatcactcaatttgaaaagtattctgaggatcaaatttgccttagttttacatgatgtatgactatatgtctggtctgtgtatcttttcaatgtatat |
115 |
Q |
| |
|
|||||||||| |||| || ||| || |||| ||||| |||| | ||||||||||||| ||||| | ||||| |||||||||||||||||||||| |||| |
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| T |
36875753 |
tttatcactctatttaaatagtgtt-tgagaatcaagattgcttcagttttacatgatatatgattgtatgtatggtctgtgtatcttttcaatgcatat |
36875851 |
T |
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| Q |
116 |
agcatttaatttgcatcactgttgatttat---------attatgtgttttccgaacagtgggcactcatggcacttctaaacccaatatttagtgtgga |
206 |
Q |
| |
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| |||||| |||||||||| || || | | ||||| ||||||| | ||||||||||||||| ||||||||||||| || ||| |||| |
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| T |
36875852 |
aacattta-tttgcatcacaattaatattttaaagagaaattatatgttttctgggcagtgggcactcatgacacttctaaacccgtccttcagtttgga |
36875950 |
T |
|
| Q |
207 |
gaacttggtatacatgggttttcctggtgatccgtcatctgctgtctgtgtgactaggaggcgacatgtggatcgcaaaaaacaacattcagaaagaaat |
306 |
Q |
| |
|
||| || ||||||| || || |||||||| || | |||||||||| |||||||||||| ||||| || ||||| |||||||||||||||||||||||| |
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| T |
36875951 |
gaatctgatatacatagggttccctggtgaaccattatctgctgtccgtgtgactaggaagcgacgcgtagatcgtaaaaaacaacattcagaaagaaat |
36876050 |
T |
|
| Q |
307 |
gtcttgcagtgcttc |
321 |
Q |
| |
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|| |||||||||||| |
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| T |
36876051 |
gtattgcagtgcttc |
36876065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 36875296 - 36875384
Alignment:
| Q |
54 |
ttgccttagttttacatgatgtatgactatatgtctggtctgtgtatcttttcaatgtatatagcatttaatttgcatcactgttgattt |
143 |
Q |
| |
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|||||| |||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| ||||||||| |||||||||| |
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| T |
36875296 |
ttgcctcagttttgcatgatgtatgactgtatgtcttgtctgtgtatcttttcaatgcatataacattt-atttgcatcgctgttgattt |
36875384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 54159565 - 54159457
Alignment:
| Q |
162 |
acagtgggcactcatggcacttctaaacccaatatttagtgtggagaacttggtatacatgggttttcctggtgatccgtcatctgctgtctgtgtgact |
261 |
Q |
| |
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|||||||||||||||| ||||| || |||||| ||||||||| |||| || | ||||| |||| |||| ||||| ||||||||| || | |||||| |
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| T |
54159565 |
acagtgggcactcatgacacttatagacccaacttttagtgtgaagaatctgctttacattggttacactggcgatccatcatctgctatccgcgtgact |
54159466 |
T |
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| Q |
262 |
aggaggcga |
270 |
Q |
| |
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||||||||| |
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|
| T |
54159465 |
aggaggcga |
54159457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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