View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8405_low_1 (Length: 695)

Name: NF8405_low_1
Description: NF8405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8405_low_1
NF8405_low_1
[»] chr7 (4 HSPs)
chr7 (10-679)||(30852581-30853247)
chr7 (457-512)||(32031382-32031437)
chr7 (457-512)||(47266268-47266323)
chr7 (457-539)||(27620194-27620276)
[»] chr8 (2 HSPs)
chr8 (457-512)||(1197685-1197740)
chr8 (457-512)||(1996338-1996393)
[»] chr4 (4 HSPs)
chr4 (457-512)||(51790245-51790300)
chr4 (457-512)||(128071-128126)
chr4 (457-512)||(37995472-37995527)
chr4 (457-512)||(44506138-44506193)
[»] chr1 (4 HSPs)
chr1 (457-512)||(3027745-3027800)
chr1 (457-512)||(21620061-21620116)
chr1 (457-512)||(43069143-43069198)
chr1 (470-512)||(16296887-16296929)
[»] chr3 (1 HSPs)
chr3 (457-512)||(30801137-30801192)
[»] chr2 (1 HSPs)
chr2 (457-512)||(30518470-30518525)
[»] chr5 (1 HSPs)
chr5 (595-647)||(35910827-35910879)


Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 10 - 679
Target Start/End: Complemental strand, 30853247 - 30852581
Alignment:
Q  10 gagatgaaatgaagaaatgtatattggaaataatggacagtgagaaagggagaactatcaagagcaatgccatgaaattgaaggatttggcatcaaatgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30853247 gagatgaaatgaagaaatgtatattggaaataatggacagtgagaaagggagaactatcaagagcaatgccatgaaattgaaggatttggcatcaaatgc 30853148  T
Q  110 tgttggtgttgggggaagtactcatcaaaatattactgaatttgtgaatagtttgtttcattttgcaagttacaagcagacaatcacaaattaatttttg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30853147 tgttggtgttgggggaagtactcatcaaaatattactgaatttgtgaatagtttgtttcattttgcaagttacaagcagacaatcacaaattaattcttg 30853048  T
Q  210 atcaactgaacatttctttgttgttgacacatgcatgatgtggagtgcacaagagcacataacttttatttgcaacaataattgttatgtaaacnnnnnn 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  30853047 atcaactgaacatttctttgttgttgacacatgcatgatgtggagtgcacaagagcacataacttttatttgcaacaataattgttatgtaaac----ta 30852952  T
Q  310 nnnnnnnnntggttacaactatatc-nnnnnnnnnaacattaagcttgtaggcatgaaaataaacataaatttattattatttattgtcacttccaannn 408  Q
             ||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       
T  30852951 tatatatattggttacaactatatctttttattttaacattaagcttgtaggcatgaaaataaacataaatttattattatttattgtgacttccaattt 30852852  T
Q  409 nnnnaagaatgtcaaaatatttgtcaaacactttnnnnnnnntactgaaatcaaattttcctattttcattcccaaataagttattcatgagaataattt 508  Q
        ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  30852851 tttcaagaatgtcaaaatatttgtcaaacactttaaaaaaaatactgaaatcaaattttcctattttcattctcgaataagttattcatgagaataattt 30852752  T
Q  509 gtgtgtcattgaaataaacgtccccttaaaaattttaactctgagggtgcaagtagtgggacaataaccatgaactttggtgacaatattatgagatcaa 608  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30852751 gtgtgtcactgaaataaacatccccttaaaatttttaactctgagggtgcaagtagtgggacaataaccatgaactttggtgacaatattatgagatcaa 30852652  T
Q  609 gatgaaagagaattgagagagaaaattcatatatcgaatcaatgacatgagaaaatgaagttggttattag 679  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30852651 gatcaaagagaattgagagagaaaattcatatatcgaatcaatgacatgagaaaatgaagttggttattag 30852581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 32031437 - 32031382
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| |||||||||||||| ||| ||||||| | ||||||||||||||    
T  32031437 aatcaaattttcatattttcattcccagatatgttattcctaagaataatttgtgt 32031382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 47266323 - 47266268
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| |||||||||||||  ||| ||||||| ||||||||||||||||    
T  47266323 aatcaaattttcatattttcattcccggatatgttattcctgagaataatttgtgt 47266268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 539
Target Start/End: Original strand, 27620194 - 27620276
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgtgtcattgaaataaacgtccccttaaaa 539  Q
    |||||||||||| |||||||||| ||| ||| | ||||| || ||||||||||||| ||  | ||| ||||| ||||||||||    
T  27620194 aatcaaattttcatattttcatttccagatatgctattcctgtgaataatttgtgtttccctaaaacaaacgcccccttaaaa 27620276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 457 - 512
Target Start/End: Original strand, 1197685 - 1197740
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| |||||||||||||  ||| ||||||| ||||||||||||||||    
T  1197685 aatcaaattttcatattttcattcccggatatgttattcctgagaataatttgtgt 1197740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 1996393 - 1996338
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| ||||||| |||||  ||| ||||||| ||||||||||||||||    
T  1996393 aatcaaattttcatattttcgttcccggatatgttattcctgagaataatttgtgt 1996338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 457 - 512
Target Start/End: Original strand, 51790245 - 51790300
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| ||||||||||||||  || |||||||||| |||||||||||||    
T  51790245 aatcaaattttcatattttcattcccatgtatgttattcatgggaataatttgtgt 51790300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 512
Target Start/End: Original strand, 128071 - 128126
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| |||||||||||||   || ||||||| ||||||||||||||||    
T  128071 aatcaaattttcatattttcattcccgggtatgttattcctgagaataatttgtgt 128126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 37995527 - 37995472
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| |||||||||||||  |||| |||||| ||||| ||||||||||    
T  37995527 aatcaaattttcatattttcattcccggataaattattcctgagattaatttgtgt 37995472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 44506193 - 44506138
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| |||||||||||||| ||| ||||||| ||  ||||||||||||    
T  44506193 aatcaaattttcatattttcattcccagatatgttattcctggaaataatttgtgt 44506138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 3027800 - 3027745
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| |||||||||||| |  |||||||||| ||||||||||||||||    
T  3027800 aatcaaattttcatattttcattccgaggtaagttattcctgagaataatttgtgt 3027745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 21620116 - 21620061
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| ||||||||||||||  || ||||||| || |||||||||||||    
T  21620116 aatcaaattttcatattttcattcccaggtatgttattcctgggaataatttgtgt 21620061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 512
Target Start/End: Original strand, 43069143 - 43069198
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| ||||||||||||| | || ||||||| || |||||||||||||    
T  43069143 aatcaaattttcatattttcattcccgagtatgttattcctgggaataatttgtgt 43069198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 16296887 - 16296929
Alignment:
Q  470 tattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    ||||||||||||| |||||||||||| | ||||||||||||||    
T  16296887 tattttcattcccgaataagttattcctaagaataatttgtgt 16296929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 512
Target Start/End: Original strand, 30801137 - 30801192
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| |||||||||||||   || ||||||| ||||||||||||||||    
T  30801137 aatcaaattttcatattttcattcccgggtatgttattcctgagaataatttgtgt 30801192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 30518525 - 30518470
Alignment:
Q  457 aatcaaattttcctattttcattcccaaataagttattcatgagaataatttgtgt 512  Q
    |||||||||||| |||||||||||||   || |||||||||| |||||||||||||    
T  30518525 aatcaaattttcatattttcattcccgggtatgttattcatgggaataatttgtgt 30518470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 647
Target Start/End: Complemental strand, 35910879 - 35910827
Alignment:
Q  595 tattatgagatcaagatgaaagagaattgagagagaaaattcatatatcgaat 647  Q
    |||||||  |||||||| ||||||||||||||||||||| |||| ||| ||||    
T  35910879 tattatgctatcaagatcaaagagaattgagagagaaaactcatttatggaat 35910827  T

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