View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8405_low_6 (Length: 250)
Name: NF8405_low_6
Description: NF8405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8405_low_6 |
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| [»] chr5 (4 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 14773988 - 14773751
Alignment:
| Q |
12 |
atttttattgtgacagtgaaagacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgtgttggcatttatttct |
111 |
Q |
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| T |
14773988 |
atttttattgtgacagtgaaagacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgttttggcatttatttct |
14773889 |
T |
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| Q |
112 |
tccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaag |
211 |
Q |
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| T |
14773888 |
tccaattcatgattcatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaacaag |
14773789 |
T |
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| Q |
212 |
gagtctttggcctcatgtgacattgcagtttttgttcat |
250 |
Q |
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| T |
14773788 |
gagtctttggcctcatgtgaca-tgcagtttttgttcat |
14773751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 17881248 - 17881020
Alignment:
| Q |
20 |
tgtgacagtgaaagacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgtgt-tggcatttatttcttccaatt |
118 |
Q |
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| T |
17881248 |
tgtgacagagaaagacatttcatttctttcgccttttcctgcaccaaagtcttcatttgatgtattcattttgtatatattggaattacatcttccaatt |
17881149 |
T |
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| Q |
119 |
catgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctt |
218 |
Q |
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| T |
17881148 |
cacggttaatcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggtggagtcacaaagctgctagccaataaggagtctt |
17881049 |
T |
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| Q |
219 |
tggcctcatgtgacattgcagtttttgtt |
247 |
Q |
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| T |
17881048 |
tggcctcatgtgacattgcggtttttgtt |
17881020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 15015727 - 15015513
Alignment:
| Q |
38 |
ttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtg--tgttggcatttatttcttccaattcatgatttatcgtttta |
135 |
Q |
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| T |
15015727 |
ttcagttctttcaacttttctcacaccaaagtcttcatttgatgtattcattttgtacatattgatacttatatcttccaattcattgtttaccattttg |
15015628 |
T |
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| Q |
136 |
tttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggcctcatgtgacatt |
235 |
Q |
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| T |
15015627 |
tttgtaggaaaacaaaaaatatattgtgctgagagagatttctgaaggtggagttacaaagctgctagcaaacaaggagtctctgggctcatgtgacatt |
15015528 |
T |
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| Q |
236 |
gcagtttttgttcat |
250 |
Q |
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| T |
15015527 |
gcagtttttgttcat |
15015513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 97 - 247
Target Start/End: Complemental strand, 15048403 - 15048253
Alignment:
| Q |
97 |
ttggcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagag |
196 |
Q |
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| T |
15048403 |
ttggcatttatatcttccagttcacggttaatcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggaggagtcacaaag |
15048304 |
T |
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| Q |
197 |
ctgctggccaccaaggagtctttggcctcatgtgacattgcagtttttgtt |
247 |
Q |
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| T |
15048303 |
ctgctagccaataagaagtctttggcctcatgtgacattgcaatttttgtt |
15048253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 250
Target Start/End: Complemental strand, 54159114 - 54158964
Alignment:
| Q |
100 |
gcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctg |
199 |
Q |
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| T |
54159114 |
gcatttctttcttcatatttatgttttatcattttgtttgcagggaaagaagaaatatcttgtgctgagagagattcctgaagatggagttaaagggctg |
54159015 |
T |
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| Q |
200 |
ctggccaccaaggagtctttggcctcatgtgacattgcagtttttgttcat |
250 |
Q |
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| T |
54159014 |
ctggcgaataaggagtctttggcctcttgtgacattgcaattattgttcat |
54158964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 53868220 - 53868346
Alignment:
| Q |
124 |
tttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggcc |
223 |
Q |
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| T |
53868220 |
tttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcc |
53868319 |
T |
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| Q |
224 |
tcatgtgacattgcagtttttgttcat |
250 |
Q |
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| T |
53868320 |
tcttgtgacgttgcagttttcgttcat |
53868346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 250
Target Start/End: Complemental strand, 51366025 - 51365876
Alignment:
| Q |
100 |
gcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcac-agagct |
198 |
Q |
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| T |
51366025 |
gcatttctttcttcaagttcatgttttatcatt--agttgcagggaaacaagaaatatcttgtgttgaaagagattcatgaagatggagtcaagagaact |
51365928 |
T |
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| Q |
199 |
gctggccaccaaggagtctttggcctcatgtgacattgcagtttttgttcat |
250 |
Q |
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| T |
51365927 |
gctggctaataaggagtctttggcctcttgtgacattgccatttttgttcat |
51365876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 246
Target Start/End: Original strand, 36876445 - 36876577
Alignment:
| Q |
115 |
aattcatgattt-atcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaagga |
213 |
Q |
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| T |
36876445 |
aattcatgattttattgttttgtttgcaggaaaacagaaaatatctcgtgttgaaagagattccagaaggtgaagttgcaagactggtggccgacaagga |
36876544 |
T |
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| Q |
214 |
gtctttggcctcatgtgacattgcagtttttgt |
246 |
Q |
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| T |
36876545 |
gtctttggcctcatgtgacattgcagtttttgt |
36876577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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