View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8405_low_7 (Length: 240)
Name: NF8405_low_7
Description: NF8405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8405_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 24815733 - 24815838
Alignment:
| Q |
114 |
atgtcgaattggagtaaattttgatgaataatgatatacgtacgagtattgaaaaaatgtagcagtagttttgagttgactgacattctggagacaatca |
213 |
Q |
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| T |
24815733 |
atgtcgaattggagtaaattttgaagaataatgatatatgtacgagtattgaaaaaatgtagtagtagttttgagttgactgacatgctggaggcaatca |
24815832 |
T |
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| Q |
214 |
cacggg |
219 |
Q |
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|||||| |
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| T |
24815833 |
cacggg |
24815838 |
T |
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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 10235434 - 10235528
Alignment:
| Q |
14 |
atttagacaactgttacccattaatgaaggacgtggcagaaaaatagcttagggcataagtgggttttccacaggatcttcctttcttatattaa |
108 |
Q |
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| T |
10235434 |
atttagacaacttttacccattaatgaaggacgtggcagaaaaagagcttagggcataagtgggttttccacatgatcttcctttcttatattaa |
10235528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 8338151 - 8338247
Alignment:
| Q |
12 |
ttatttagacaactgttacccattaatgaaggacgtggcagaaaaatagcttagggcataagtgggttttccacaggatcttcctttcttatattaa |
108 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8338151 |
ttatttagacaacttttatccattaatgaaggacgtggcagaaaaagagcctagggcataagtgggttttccacaggatcttcctttcttatattaa |
8338247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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