View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8406_high_3 (Length: 352)
Name: NF8406_high_3
Description: NF8406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8406_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 56378483 - 56378838
Alignment:
| Q |
1 |
ttcctgatcaggctcttggtcttgcctaccaccaccaccactctattcctaatacagcatcagcagcagcaacaggtaaca---acaacattcttccttc |
97 |
Q |
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| T |
56378483 |
ttcctgatcaggctcttggtcttggctaccaccaccaccactctactcctaatacagcatcagcagcagcaacaggtaacaacaacaacattcttccttc |
56378582 |
T |
|
| Q |
98 |
cagagctgtagcgccacctcatggacatggccacatcatcatgccattcaactacaacataccttctgaatctgatgaacaagaagaggcagcaggtaga |
197 |
Q |
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| T |
56378583 |
tagagctgtagcgccacctcatggacatggccacatcatcatgccattcaactacaacataccttctgaatctgatgaacaagaagaggcagcaggtaga |
56378682 |
T |
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| Q |
198 |
ctacatatg---------catcatcaacagcagcagcagcaggaggtagtgatgaagaaaaggttcgggacaaaattcacacaggaacagaaggagaaaa |
288 |
Q |
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| T |
56378683 |
ctacatatgcatcatcatcatcatcaacagcagcagcagcaggaggtagtgatgaagaaaaggttcaggacaaaattcacacaggaacagaaggagaaaa |
56378782 |
T |
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| Q |
289 |
tgttgaactttgctgagaaagttggatggaaatttcaaaagcaagaggaatctgtg |
344 |
Q |
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| T |
56378783 |
tgttgaactttgctgagaaagttggatggaaatttcaaaagcaagaggaatctgtg |
56378838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 14021573 - 14021521
Alignment:
| Q |
256 |
ggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaa |
308 |
Q |
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| T |
14021573 |
ggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaa |
14021521 |
T |
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