View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8406_high_4 (Length: 333)
Name: NF8406_high_4
Description: NF8406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8406_high_4 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 11919597 - 11919913
Alignment:
| Q |
17 |
atagatgaccttaaaccattgaatttctctttgcatttgaagagcagcaccagatctactatcaagatcagatgacggacctaagtgtgctgccaggtgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11919597 |
atagatgaccttaaaccattgaatttctctttgcatttgaagagcagcaccagatctactatcaagatcagatgacggacctaagtgtgctgccaggtgc |
11919696 |
T |
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| Q |
117 |
aacaagttattgtcaaacttgtctatacgatttctaaatatctcactccgtccattaagacagtgtatgagttgaaacacattttctttacgattcagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11919697 |
aacaagttattgtcaaacttgtctatacgatttctaaatatctcactccgtccattaagacagtgtatgagttgaaacacattttctttacgattcagaa |
11919796 |
T |
|
| Q |
217 |
ttgcataagaaaatatgcctctattgcaactatcaatagccgaaagcaaaccaagattagcctccttcatggcatttatgaactcgattattccgtgttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11919797 |
ttgcataagaaaatatgcctctattgcaactatcaatagccgaaagcaaaccaagattagcctccttcatagcatttatgaactcgattattccgtgttg |
11919896 |
T |
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| Q |
317 |
tgctccatgcaacatgc |
333 |
Q |
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||||||||||||||||| |
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| T |
11919897 |
tgctccatgcaacatgc |
11919913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 24 - 331
Target Start/End: Original strand, 12009374 - 12009681
Alignment:
| Q |
24 |
accttaaaccattgaatttctctttgcatttgaagagcagcaccagatctactatcaagatcagatgacggacctaagtgtgctgccaggtgcaacaagt |
123 |
Q |
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| T |
12009374 |
accttaaaccattgaatttctctttgcatttgcagagcagcaccggatctgctatgacgatcagatgaaggacctaaatgtgctgccaggtgcaacaagt |
12009473 |
T |
|
| Q |
124 |
tattgtcaaacttgtctatacgatttctaaatatctcactccgtccattaagacagtgtatgagttgaaacacattttctttacgattcagaattgcata |
223 |
Q |
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||||| |||| ||||||||||| ||||| |||||| | |||||||| | | | |||||||||||||||||||||| ||| |||| || |||||||| |
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| T |
12009474 |
tattgccaaatgagtctatacgatgtctaagtatctcctttcgtccattgacagaatgtatgagttgaaacacattttgtttgcgatgcaagattgcata |
12009573 |
T |
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| Q |
224 |
agaaaatatgcctctattgcaactatcaatagccgaaagcaaaccaagattagcctccttcatggcatttatgaactcgattattccgtgttgtgctcca |
323 |
Q |
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|||||||||||||||| ||| ||||| | || ||||| ||| | ||||||| ||| |||||||||||||||||||||||||||| ||||| | | || |
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| T |
12009574 |
cgaaaatatgcctctatggcagctatcgacggctgaaagaaaattaggattagcgtccctcatggcatttatgaactcgattattccatgttgggatgca |
12009673 |
T |
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| Q |
324 |
tgcaacat |
331 |
Q |
| |
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|||||||| |
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| T |
12009674 |
tgcaacat |
12009681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 310
Target Start/End: Complemental strand, 11999447 - 11999156
Alignment:
| Q |
22 |
tgaccttaaaccattgaatttctctttgcatttgaagagcagcaccagatctactatcaagatcagatgacggacctaagtgtgctgccaggtgcaacaa |
121 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||| |||| | | | ||| | |||| |||||||| | ||||||||||||||| || |
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| T |
11999447 |
tgaccttgaaccattgaatttctctttgcatttgtagagcagcaccatatctggttttaggattaaatgaaggacctaaatatgctgccaggtgcaataa |
11999348 |
T |
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| Q |
122 |
gttattgtcaaacttgtctatacgat---ttctaaatatctcactccgtccattaagacagtgtatgagttgaaacacattttctttacgattcagaatt |
218 |
Q |
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||||| |||||||||| || | || |||||||| |||| || |||| | ||||| | |||||||||||||| |||| |||||||| || |||| |
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| T |
11999347 |
attattcccaaacttgtccatgccatatcttctaaatgtctccttctgtccctcaagaccaagcatgagttgaaacacgttttgtttacgatacataatt |
11999248 |
T |
|
| Q |
219 |
gcataagaaaatatgcctctattgcaactatcaatagccgaaagcaaaccaagattagcctccttcatggcatttatgaactcgattattcc |
310 |
Q |
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|||||||||||||||||||||||||| ||||| || | ||||||||| || |||||| ||| |||| |||||||||||||| |||||||| |
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| T |
11999247 |
gcataagaaaatatgcctctattgcagctatccattgatgaaagcaaatcagaattagcatccctcattgcatttatgaactcaattattcc |
11999156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 11883551 - 11883647
Alignment:
| Q |
24 |
accttaaaccattgaatttctctttgcatttgaagagcagcaccagatctactatcaagatcagatgacggacctaagtgtgctgccaggtgcaaca |
120 |
Q |
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||||| |||||| |||||||||||||||| || | ||||| ||| ||||||| |||||||||||| || || ||||| | | |||||| |||||||| |
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| T |
11883551 |
accttgaaccatagaatttctctttgcatctgcatagcaggaccggatctacgatcaagatcagaggaaggccctaaatatcctgccaagtgcaaca |
11883647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 11791638 - 11791689
Alignment:
| Q |
24 |
accttaaaccattgaatttctctttgcatttgaagagcagcaccagatctac |
75 |
Q |
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|||||||||||| ||| |||||||||||||| ||||||| ||||||||||| |
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| T |
11791638 |
accttaaaccataaaatctctctttgcatttggagagcaggaccagatctac |
11791689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 12112835 - 12112863
Alignment:
| Q |
21 |
atgaccttaaaccattgaatttctctttg |
49 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12112835 |
atgaccttaaaccattgaatttctctttg |
12112863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 6130197 - 6130234
Alignment:
| Q |
24 |
accttaaaccattgaatttctctttgcatttgaagagc |
61 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
6130197 |
accttaaaccattgaagttctctttgcatttgaagagc |
6130234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 6860646 - 6860687
Alignment:
| Q |
24 |
accttaaaccattgaatttctctttgcatttgaagagcagca |
65 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
6860646 |
acctgaaaccattgaagttctctttgcatttgaagagcagca |
6860687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 6105629 - 6105588
Alignment:
| Q |
24 |
accttaaaccattgaatttctctttgcatttgaagagcagca |
65 |
Q |
| |
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|||||||||||||||| ||| | ||||||||||||||||||| |
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| T |
6105629 |
accttaaaccattgaagttcgccttgcatttgaagagcagca |
6105588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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