View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8406_high_6 (Length: 266)
Name: NF8406_high_6
Description: NF8406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8406_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 7173036 - 7172798
Alignment:
| Q |
20 |
gtaatctccaaaacaaacactctt-------ggtaacttgctaatattagggatgaaaaagaagaaaacaaaaattcgtacgtgcatataaaatttgtca |
112 |
Q |
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| T |
7173036 |
gtaatctccaaaacaaacactcttaagggttggtaacttgctaatattagggatgaaaaagaaaaaaacataaatttgtacctgcatataaaatttgtca |
7172937 |
T |
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| Q |
113 |
tgcacatgaagcgagtagtttaaaaaataaagaatcaaataaacaaatatttcgattactcgtttatcatgaagacgaatatggaattaatggtaaatgt |
212 |
Q |
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| T |
7172936 |
tgcacatgaagcgagtagtttaaaaaataaagaatcaaataaacaaatatttcaattactcgtttatcatgaagacgaatatggaattaatggtaaatgt |
7172837 |
T |
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| Q |
213 |
ataccaaattgttgggaggaagtactagctagggagaat |
251 |
Q |
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| T |
7172836 |
ataccaaattgttgggaggaagtactagctagggagaat |
7172798 |
T |
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