View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8406_low_10 (Length: 243)
Name: NF8406_low_10
Description: NF8406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8406_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 4819504 - 4819720
Alignment:
| Q |
21 |
acagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgggct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
4819504 |
acagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttactacatcatcaagaccggact |
4819603 |
T |
|
| Q |
119 |
catagataggaagttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatgg----attaatgcaatgactgc |
214 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4819604 |
catagataggaacttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatggacatattaatgcaatgactgc |
4819703 |
T |
|
| Q |
215 |
cattgctggaccaccaa |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4819704 |
cattgctggaccaccaa |
4819720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 198
Target Start/End: Original strand, 10779315 - 10779477
Alignment:
| Q |
37 |
cttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgggctcatagataggaagttg |
134 |
Q |
| |
|
|||| ||||||||||||||||| | | |||||||||||| | |||||| |||||||| |||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
10779315 |
cttcatagacatgtttttcaacatcagtgctgaagaaaagg-tcttgctgcgacattactttactacataatcaagattttgctcatagataggaagttg |
10779413 |
T |
|
| Q |
135 |
attgttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatgga |
198 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| || || ||||| |||||||||||| |
|
|
| T |
10779414 |
attgttgttccacactgcaatgcgcgatttcgagatatcgaccactgctacgtcaatggatgga |
10779477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 4829308 - 4829482
Alignment:
| Q |
25 |
acactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgggctcata |
122 |
Q |
| |
|
||||||| ||| |||||||||||| ||||| ||| | | ||||||||||| | ||||||| ||| |||||||| ||| ||||||||||| ||||| || |
|
|
| T |
4829308 |
acactatgtcagcttcgtagacatattttttaacatcatagctgaagaaaa-gttcttgccacgaaattgctttgctacatcatcaagaccaggctcgta |
4829406 |
T |
|
| Q |
123 |
gataggaagttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatgga |
198 |
Q |
| |
|
||| |||||||||| ||||| ||||| |||||| | | ||| | ||||||| ||||| ||||||||| |||||||| |
|
|
| T |
4829407 |
gatgggaagttgatggttgttccacagtgcaatgctcaattacaagatatcgacgactgctacttcagtggatgga |
4829482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 4803923 - 4804060
Alignment:
| Q |
37 |
cttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgggctcatagataggaagttg |
134 |
Q |
| |
|
|||| ||||||||||||||||| | | || |||||| || | ||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
4803923 |
cttcatagacatgtttttcaacatcagtgttgaagacaaggtacttgcatcgacattgctttactacatcatcaatacctggctcatagataggaagttg |
4804022 |
T |
|
| Q |
135 |
attgttgtgccacactgcaatacgcgatttcgagatat |
172 |
Q |
| |
|
|||| | | | | ||||||| | |||||||||||||| |
|
|
| T |
4804023 |
attgctattcaaggctgcaatgcacgatttcgagatat |
4804060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 4798043 - 4797949
Alignment:
| Q |
44 |
gacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttact--atcatcaagaccgggctcatagataggaagttgat |
136 |
Q |
| |
|
||||||||||| ||| | | |||||||||||| | ||||||||||| ||||||||||| |||||||||||| || |||||||| | |||||||| |
|
|
| T |
4798043 |
gacatgttttttaacatcagtgctgaagaaaaggttcttgccgcgatattgctttactacatcatcaagacctggttcatagatggcaagttgat |
4797949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 179
Target Start/End: Original strand, 4824479 - 4824574
Alignment:
| Q |
86 |
gcgacattgctttactat--catcaagaccgggctcatagataggaagttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgac |
179 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||| ||||||||||| ||||| ||||| ||| || |||| |||||||| | |||||||||||| |
|
|
| T |
4824479 |
gcgacattgctttactaaaccatcaaaacctggctgatagataggaatttgatcgttgtaccatgctacaatgcgcgattttgtgatatcaacgac |
4824574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 4835691 - 4835791
Alignment:
| Q |
45 |
acatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta---------tcatcaagaccgggctcatagataggaagttga |
135 |
Q |
| |
|
|||||||||| || | |||||||||||||| | |||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
4835691 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcattcatcaagatcgggctcatagataggaagttga |
4835790 |
T |
|
| Q |
136 |
t |
136 |
Q |
| |
|
| |
|
|
| T |
4835791 |
t |
4835791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 18937598 - 18937667
Alignment:
| Q |
33 |
tcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta |
102 |
Q |
| |
|
||||||||||||| ||| |||||||| | |||||| ||||||| | | |||||| |||||| |||||||| |
|
|
| T |
18937598 |
tcaacttcgtagaaatgcttttcaacatcaatgctaaagaaaaggtttttgccgtgacattactttacta |
18937667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University