View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8406_low_5 (Length: 310)
Name: NF8406_low_5
Description: NF8406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8406_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 21 - 296
Target Start/End: Complemental strand, 7052264 - 7051986
Alignment:
| Q |
21 |
ccttagttagcattaggaacataccttcctaagaaattgatgagtatggtgaactagtttccagtcgctccggtgatccgtgacattttttgcatatgag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7052264 |
ccttagttagcattaggaacataccttcctaagaaattgatgagtatggtaaactagtttccagtcgctccggtgatccgtgacattttttgcatatgag |
7052165 |
T |
|
| Q |
121 |
aaaccagttccaagtggcagatctacaaaaataatgctgcatatctgcccaaaatatcattaa---cattattacaagtaaatcaccttccaataatgaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7052164 |
aaaccagttccaagtggcagatctacaaaaataatgctgcatatctgcccaaaatatcattaaaattattattacaagtaaatcaccttccaataatgaa |
7052065 |
T |
|
| Q |
218 |
atcatggaaataaacacataaagaatgaatatttagacttgtagagctatcacaacaagaactaagtacatattataac |
296 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7052064 |
atcatggaaatcaacacataaagaatgaatatttagacttgtagagctatcacaacaagaactaagtacatattataac |
7051986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 7003858 - 7003622
Alignment:
| Q |
24 |
tagttagcattaggaacataccttcctaagaaattgatgagtatggtgaactagtttccagtcgctccggtgatccgtgacattttttgcatatgagaaa |
123 |
Q |
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|||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7003858 |
tagtgagcataatgaacataccttcctaagaaattgatgagtttggtgaactagtttccagtcgctccgatgatccgtgacattttttgcatatgagaag |
7003759 |
T |
|
| Q |
124 |
ccagttccaagtggcagatctacaaaaataatgctgcatatctgcccaaaatatcattaacattattacaagtaaatcaccttccaataatgaaatcatg |
223 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| | |
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| T |
7003758 |
ccagttccaagtggcaaatctacaaaaataatgctgcatagctgcccaaaagatcattaacattactacgagtaaatcaccttccaataatgaaatcagg |
7003659 |
T |
|
| Q |
224 |
gaaataaacacataaagaatgaatatttagacttgta |
260 |
Q |
| |
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||| ||||| | | |||| | ||||||| ||||||| |
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| T |
7003658 |
aaaagaaacataaatagaacggatatttatacttgta |
7003622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 6993740 - 6993501
Alignment:
| Q |
24 |
tagttagcattaggaacataccttcctaagaaattgatgagtatggtgaactagtttccagtcgctccggtgatccgtgacattttttgcatatgagaaa |
123 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993740 |
tagttagcattaggaacataccttcctaagaaattgaaaagtatggtgaactagtttccagtcgctccggtgatccgtgacattttttgcatatgagaaa |
6993641 |
T |
|
| Q |
124 |
ccagttccaagtggcagatctacaaaaataatgctgcatatctgcccaaaatatcattaacattattacaagtaaatcaccttccaataatgaaatcatg |
223 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||| ||| |||||| |||||| ||||| ||| |||||| |||||||||||||||||||||| |
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| T |
6993640 |
ccagttccaagcggcaaattaacaaaaataatgctgcatagctgaccaaaagttcattagcattactaccggtaaatgaccttccaataatgaaatcatg |
6993541 |
T |
|
| Q |
224 |
gaaat-aaacacataaagaatgaatatttagacttgtaga |
262 |
Q |
| |
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|| | ||||| | ||||| |||||||| |||||||||| |
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|
| T |
6993540 |
aaagtaaaacataaaaagagagaatattttgacttgtaga |
6993501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 7046252 - 7046053
Alignment:
| Q |
24 |
tagttagcattaggaacataccttcctaagaaattgatgagtatggtgaactagtttccagtcgctccggtgatccgtgacattttttgcatatgagaaa |
123 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
7046252 |
tagttagcattacgaacataccttcctaagaaattgatgagtattgtgaactagtttccagtcgctccggtaatccttgacattttttgcatatgagaaa |
7046153 |
T |
|
| Q |
124 |
ccagttccaagtggcagatctacaaaaataatgctgcatatctgcccaaaatatcattaacattattacaagtaaatcaccttccaataatgaaatcatg |
223 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| ||| | ||||||||||||| |||| | | |||||| || |||||||||||||||||||| |
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|
| T |
7046152 |
ccagttccaagtggcaaatctacaaaaataatgttgcatagctgacaaaaatatcattaaaattacttccagtaaaacatcttccaataatgaaatcatg |
7046053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 267
Target Start/End: Complemental strand, 7038972 - 7038727
Alignment:
| Q |
24 |
tagttagcattaggaacataccttcctaagaaattgatgagtatggtgaactagtttccagtcgctccggtgatccgtgacattttttgcatatgagaaa |
123 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||||| || || ||| | ||||||||||||||||| |||||| |
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|
| T |
7038972 |
tagttagcataatgaacataccttcctaagaaattgatgagcatggtgaactaatttccagtcacttcgatgagcagtgacattttttgcatacgagaaa |
7038873 |
T |
|
| Q |
124 |
ccagttccaagtggcagatctacaaaaataatgctgcatatctgcccaaaatatcattaacattattacaagtaaatcaccttccaataatgaaatcatg |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || ||| |||||| ||||||||||||| ||| ||||||||||||| ||||| |||||||| |
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|
| T |
7038872 |
ccagttccaagtggcaaatctacaaaaataatgctggatcgctgaccaaaagatcattaacattactaccagtaaatcacctttgaataacaaaatcatg |
7038773 |
T |
|
| Q |
224 |
gaaataaacacataaa--gaatgaatatttagacttgtagagctat |
267 |
Q |
| |
|
||| ||||| ||||| |||||| ||||| || |||||||||||| |
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| T |
7038772 |
aaaagaaacatataaaaggaatgagtattttgatttgtagagctat |
7038727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 37 - 268
Target Start/End: Complemental strand, 7013285 - 7013053
Alignment:
| Q |
37 |
gaacataccttcctaagaaattgatgagtatggtgaactagtttccagtcgctccggtgatccgtgacattttttgcatatgagaaaccagttccaagtg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| || | |||||| ||||||||| || || ||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
7013285 |
gaacataccttcctaagaaattgatgagcatcgcgaactaatttccagtcacttcgatgagcagtgacattttttgcatatgagaaaccagttccaagtg |
7013186 |
T |
|
| Q |
137 |
gcagatctacaaaaataatgctgcatatctgcccaaaatatcattaacattattacaagtaaatcaccttccaataatgaaatcatggaaa-taaacaca |
235 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| ||||| ||||||||||||| ||| |||||||||||||| ||||| |||||||| ||| ||| | | |
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|
| T |
7013185 |
gcaaatctacaaaaataatgctgcatagctgaacaaaagatcattaacattactaccagtaaatcaccttcaaataacaaaatcatgaaaagaaaatata |
7013086 |
T |
|
| Q |
236 |
taaagaatgaatatttagacttgtagagctatc |
268 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |
|
|
| T |
7013085 |
aaaagaatgaatattttgaattgtagagctatc |
7013053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 7026445 - 7026313
Alignment:
| Q |
24 |
tagttagcattaggaacataccttcctaagaaattgatgagtatggtgaactagtttccagtcgctccggtgatccgtgacattttttgcatatgagaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
7026445 |
tagttagcattaggaacataccttcctaagaaattgataagtattgtgaacaagtttccagtcgctccggtgatacgtgacattttttgcatatgagaaa |
7026346 |
T |
|
| Q |
124 |
ccagttccaagtggcagatctacaaaaataatg |
156 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
7026345 |
ccagttccaagtggcaaatctacaaaaataatg |
7026313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 7019624 - 7019489
Alignment:
| Q |
37 |
gaacataccttcctaagaaattgatgagtatggtgaactagtttccagtcgctccggtgatccgtgacattttttgcatatgagaaaccagttccaagtg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || || | ||||||||||| |||||||||||||||| |||||||| |
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|
| T |
7019624 |
gaacataccttcctaagaaattgatgagtatggtgaactaatttccagtcgcttcgatgtgcagtgacatttttggcatatgagaaaccagatccaagtg |
7019525 |
T |
|
| Q |
137 |
gcagatctacaaaaataatgctgcatatctgcccaa |
172 |
Q |
| |
|
||| ||||||||| ||||||||| ||| ||| |||| |
|
|
| T |
7019524 |
gcaaatctacaaacataatgctggatagctgaccaa |
7019489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 46183929 - 46183970
Alignment:
| Q |
42 |
taccttcctaagaaattgatgagtatggtgaactagtttcca |
83 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| ||||| |
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| T |
46183929 |
taccttcctaagaaattgatgagcattgtgaactagcttcca |
46183970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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