View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8406_low_8 (Length: 266)
Name: NF8406_low_8
Description: NF8406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8406_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 7173036 - 7172798
Alignment:
| Q |
20 |
gtaatctccaaaacaaacactctt-------ggtaacttgctaatattagggatgaaaaagaagaaaacaaaaattcgtacgtgcatataaaatttgtca |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
7173036 |
gtaatctccaaaacaaacactcttaagggttggtaacttgctaatattagggatgaaaaagaaaaaaacataaatttgtacctgcatataaaatttgtca |
7172937 |
T |
|
| Q |
113 |
tgcacatgaagcgagtagtttaaaaaataaagaatcaaataaacaaatatttcgattactcgtttatcatgaagacgaatatggaattaatggtaaatgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7172936 |
tgcacatgaagcgagtagtttaaaaaataaagaatcaaataaacaaatatttcaattactcgtttatcatgaagacgaatatggaattaatggtaaatgt |
7172837 |
T |
|
| Q |
213 |
ataccaaattgttgggaggaagtactagctagggagaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7172836 |
ataccaaattgttgggaggaagtactagctagggagaat |
7172798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University