View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8407_high_2 (Length: 640)

Name: NF8407_high_2
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8407_high_2
NF8407_high_2
[»] chr8 (2 HSPs)
chr8 (216-564)||(5618006-5618356)
chr8 (564-621)||(5617692-5617749)
[»] chr3 (2 HSPs)
chr3 (216-564)||(22819543-22819893)
chr3 (564-621)||(22820150-22820207)
[»] chr1 (1 HSPs)
chr1 (145-399)||(26449635-26449887)
[»] chr7 (1 HSPs)
chr7 (13-128)||(6668693-6668809)
[»] chr5 (1 HSPs)
chr5 (125-238)||(18886811-18886926)
[»] chr2 (1 HSPs)
chr2 (89-149)||(29024739-29024800)


Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 216 - 564
Target Start/End: Complemental strand, 5618356 - 5618006
Alignment:
Q  216 gtgattgtttccattctttattttctttgatcaagcaataaaagaaaagtcgcgaaattcatatacattttcattaaaattgattgatcaacggtataag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5618356 gtgattgtttccattctttattttctttgatcaagcaataaaaaaaaagtcgcgaaattcatatacattttcattaaaattgattgatcatcggtataag 5618257  T
Q  316 gtgtcacgaaatggttgagctagtaaagtttcatacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaatttaatgacagttagtatc 415  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5618256 gtgtcacgaaatggttgagctagtaaagtttcgtacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaatttaatgacagttaatatc 5618157  T
Q  416 atttttaatttagttgttacccagacaagtgcacttaagactaatgggagtttctgcattttaatgtcttcacttgcagaaatatttcgacatttatctt 515  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5618156 atttttaatttagttgttatccagacaattgcacttaagactaatgggagtttctgcattttaatgtcttcacttgcagaaatatttcgacatttatctt 5618057  T
Q  516 aacaaatgttgtctttattaatttatcaagataat--actatcatttaagt 564  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  5618056 aacaaatgttgtctttattaatttatcaagataatacactatcatttaagt 5618006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 5617749 - 5617692
Alignment:
Q  564 tctacctacacaaaatgattatatcttctgattcttccaaacaccggtaactcagaaa 621  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5617749 tctacctacacaaaatgattatatcttctgattcttccagacaccggtaactcagaaa 5617692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 216 - 564
Target Start/End: Original strand, 22819543 - 22819893
Alignment:
Q  216 gtgattgtttccattctttattttctttgatcaagcaataaaagaaaagtcgcgaaattcatatacattttcattaaaattgattgatcaacggtataag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22819543 gtgattgtttccattctttattttctttgatcaagcaataaaaaaaaagtcgcgaaattcatatacattttcattaaaattgattgatcatcggtataag 22819642  T
Q  316 gtgtcacgaaatggttgagctagtaaagtttcatacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaatttaatgacagttagtatc 415  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22819643 gtgtcacgaaatggttgagctagtaaagtttcgtacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaatttaatgacagttaatatc 22819742  T
Q  416 atttttaatttagttgttacccagacaagtgcacttaagactaatgggagtttctgcattttaatgtcttcacttgcagaaatatttcgacatttatctt 515  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22819743 atttttaatttagttgttatccagacaattgcacttaagactaatgggagtttctgcattttaatgtcttcacttgcagaaatatttcgacatttatctt 22819842  T
Q  516 aacaaatgttgtctttattaatttatcaagataat--actatcatttaagt 564  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  22819843 aacaaatgttgtctttattaatttatcaagataatacactatcatttaagt 22819893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 22820150 - 22820207
Alignment:
Q  564 tctacctacacaaaatgattatatcttctgattcttccaaacaccggtaactcagaaa 621  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22820150 tctacctacacaaaatgattatatcttctgattcttccagacaccggtaactcagaaa 22820207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 145 - 399
Target Start/End: Complemental strand, 26449887 - 26449635
Alignment:
Q  145 aatttattgtattattgtattttgtttttcaaataatgtacaacattttcgaatataatagactacatttggt-gattgtttccattctttattttcttt 243  Q
    |||||||| ||||||  ||||| |||||| |||||||| ||||| ||||| ||||| ||| ||   ||||||| |||| ||||||||  || |||  | |    
T  26449887 aatttattttattatcttatttagtttttaaaataatgcacaaccttttcaaatattatatacggaatttggttgattttttccattagttctttgttat 26449788  T
Q  244 gatcaagcaataaaagaaaagtcgcgaaattcatatacattttcattaaaattgattgatcaacggtataaggtgtcacgaaatggttgagctagtaaag 343  Q
    || | ||||  |||| || || |||||||| ||||| ||||| ||||||||||||||||| | ||||||  |||||| ||||||||||||||||| ||||    
T  26449787 gaccgagcatgaaaa-aatagccgcgaaatacatatccattt-cattaaaattgattgattatcggtatcgggtgtcgcgaaatggttgagctaggaaag 26449690  T
Q  344 tttcatacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaattt 399  Q
    || ||||||||||||||||||||||| ||||||  ||||  |||||||||||||||    
T  26449689 ttacatacaatgaacaaaatttcaat-aaaataataatggaagtgaaagacaattt 26449635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 6668693 - 6668809
Alignment:
Q  13 gagatgaatgagactttgtatttttgtgtcaaacatagttatgttatct-aggttacgattatgttcgttgttcttatttattagtttttctttatgtta 111  Q
    |||||||| ||||||||||||||| ||||||||  || ||| ||||| | || ||| |||| ||||| || |||| |||||| | ||||| |||||||||    
T  6668693 gagatgaacgagactttgtattttagtgtcaaatgtacttaagttattttagtttatgattttgttctttattctaatttatcaatttttgtttatgtta 6668792  T
Q  112 atacttatgtcagtttt 128  Q
    | |||||||||||||||    
T  6668793 agacttatgtcagtttt 6668809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 18886811 - 18886926
Alignment:
Q  125 ttttggcaatgtattcgaataattt-attgtattattgtattttgtttttcaaataatgtacaacattttcgaatataatagactaca-tttggtgattg 222  Q
    |||||||||||||||  ||| |||| |||||||||  || |||||||||| |||||||| ||||||||||  ||||| ||||||| || |||| | ||||    
T  18886811 ttttggcaatgtatttaaatgattttattgtattaccgtgttttgttttttaaataatgcacaacattttttaatatgatagactgcattttgttaattg 18886910  T
Q  223 tttccattctttattt 238  Q
    ||| | ||||||||||    
T  18886911 ttttcgttctttattt 18886926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 29024739 - 29024800
Alignment:
Q  89 tttattagtttttctttatgttaatacttatgtcag-ttttggcaatgtattcgaataattt 149  Q
    |||||||||||||| ||| ||||| ||||||||||| ||||| |||||||||| ||||||||    
T  29024739 tttattagtttttcgttacgttaagacttatgtcagcttttgacaatgtattcaaataattt 29024800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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