View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8407_high_5 (Length: 442)
Name: NF8407_high_5
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8407_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 4687631 - 4688050
Alignment:
| Q |
1 |
ctacaatattctgaggcttgatttcttgnnnnnnnncattctcttttcttccatttttattgcttccccaactttgaacgctctcacctgcatgcttctg |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687631 |
ctacaatattctgaggcttgatttcttgttttttttcattctcttttcttccatttttattgcttccccaactttgaacgctctcacctgcatgcttctg |
4687730 |
T |
|
| Q |
101 |
ctttgaaaccttccctttagaaactcccattttcatttcatccaacactctcttcatctccttattctccttttcaacattttccaaatctattttcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687731 |
ctttgaaaccttccctttagaaactcccattttcatttcatccaacactctcttcatctccttattctccttttcaacattttccaaatctattttcatc |
4687830 |
T |
|
| Q |
201 |
tccttcagcacctgcaaattaccttcacaattatcatcattgttccactcatctttcttcatttcttcaaccctctccagcccaattttattcactgcca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687831 |
tccttcagcacctgcaaattaccttcacaattatcatcattgttccactcatctttcttcatttcttcaaccctctccagcccaattttattcactgcca |
4687930 |
T |
|
| Q |
301 |
aatacggcattttcaacccagatttccccggaaaactcacaccccaacgaaaattcaacaacaacccttgtgtcaccggcatcaccgtcctagccataac |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687931 |
aatacggcattttcaacacagatttccccggaaaactcacaccccaacgaaaattcaacaacaacccttgtgtcaccggcatcaccgtcctagccataac |
4688030 |
T |
|
| Q |
401 |
accaacacaaggtgaaagac |
420 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
4688031 |
accaacacaaggtgaaagac |
4688050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 4685583 - 4685711
Alignment:
| Q |
37 |
cattctcttttcttccatttttattgcttccccaactttgaacgctctcacctgcatgcttctgctttgaaaccttccctttagaaactcccattttcat |
136 |
Q |
| |
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|||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4685583 |
cattctcttttcttccatttctattgcttcccaaacattgaaagctctcacctgaatgcttctgctttgaaacctcccctttagaaactcccattttcat |
4685682 |
T |
|
| Q |
137 |
ttcatccaacactctcttcatctccttat |
165 |
Q |
| |
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||||||||||||||| || |||| ||||| |
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| T |
4685683 |
ttcatccaacactctttttatcttcttat |
4685711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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