View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8407_low_1 (Length: 856)

Name: NF8407_low_1
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8407_low_1
NF8407_low_1
[»] chr6 (41 HSPs)
chr6 (19-851)||(5353724-5354556)
chr6 (21-466)||(5397091-5397536)
chr6 (19-145)||(5157444-5157570)
chr6 (19-471)||(5066184-5066636)
chr6 (22-316)||(5096850-5097144)
chr6 (19-145)||(5426049-5426175)
chr6 (19-299)||(5073570-5073850)
chr6 (22-290)||(5689830-5690098)
chr6 (19-295)||(5278705-5278984)
chr6 (19-295)||(5176878-5177157)
chr6 (21-110)||(5181778-5181867)
chr6 (21-316)||(5256973-5257274)
chr6 (377-469)||(5097178-5097270)
chr6 (19-266)||(5102309-5102556)
chr6 (22-145)||(5128233-5128356)
chr6 (22-172)||(5383468-5383618)
chr6 (19-468)||(5243405-5243855)
chr6 (377-466)||(5350828-5350917)
chr6 (26-316)||(5370717-5371007)
chr6 (377-466)||(5102166-5102255)
chr6 (377-466)||(5137218-5137307)
chr6 (39-274)||(5284073-5284311)
chr6 (377-466)||(5157150-5157239)
chr6 (19-464)||(5345000-5345445)
chr6 (19-145)||(5350533-5350653)
chr6 (377-466)||(5426350-5426439)
chr6 (230-466)||(5434538-5434774)
chr6 (384-463)||(5448028-5448107)
chr6 (60-266)||(5137361-5137567)
chr6 (377-466)||(5371041-5371130)
chr6 (377-466)||(5127939-5128028)
chr6 (21-88)||(5434176-5434243)
chr6 (23-86)||(5447730-5447793)
chr6 (396-465)||(5181474-5181543)
chr6 (402-466)||(5256889-5256950)
chr6 (19-70)||(5179680-5179731)
chr6 (19-70)||(5281439-5281490)
chr6 (402-448)||(5283961-5284007)
chr6 (54-83)||(2938282-2938311)
chr6 (661-721)||(5136868-5136929)
chr6 (396-465)||(5383776-5383845)
[»] chr5 (4 HSPs)
chr5 (19-466)||(8877748-8878186)
chr5 (24-79)||(20812421-20812476)
chr5 (21-79)||(12599054-12599112)
chr5 (21-79)||(20838773-20838831)
[»] scaffold0294 (2 HSPs)
scaffold0294 (22-212)||(8649-8839)
scaffold0294 (385-465)||(8478-8558)
[»] chr3 (14 HSPs)
chr3 (19-117)||(47986716-47986814)
chr3 (19-117)||(47996003-47996101)
chr3 (19-117)||(48005290-48005388)
chr3 (19-117)||(48014575-48014673)
chr3 (150-316)||(47986546-47986712)
chr3 (150-316)||(47995833-47995999)
chr3 (150-316)||(48005120-48005286)
chr3 (150-316)||(48014405-48014571)
chr3 (21-81)||(6905806-6905866)
chr3 (21-81)||(32411083-32411143)
chr3 (370-412)||(47986477-47986519)
chr3 (370-412)||(47995764-47995806)
chr3 (370-412)||(48005051-48005093)
chr3 (370-412)||(48014336-48014378)
[»] chr7 (2 HSPs)
chr7 (19-131)||(36213659-36213771)
chr7 (385-465)||(36213382-36213462)
[»] chr4 (12 HSPs)
chr4 (21-136)||(4344787-4344902)
chr4 (21-92)||(4123808-4123879)
chr4 (21-132)||(4361218-4361329)
chr4 (21-78)||(4320502-4320559)
chr4 (21-86)||(4335486-4335551)
chr4 (25-86)||(6498401-6498462)
chr4 (23-82)||(6532111-6532170)
chr4 (23-86)||(6545323-6545386)
chr4 (23-86)||(6588071-6588134)
chr4 (23-86)||(6675846-6675909)
chr4 (27-85)||(4133290-4133348)
chr4 (396-450)||(4320139-4320193)
[»] chr8 (7 HSPs)
chr8 (25-81)||(3407323-3407379)
chr8 (26-79)||(3262629-3262682)
chr8 (21-78)||(3314999-3315056)
chr8 (21-80)||(3286516-3286575)
chr8 (21-79)||(31175988-31176046)
chr8 (21-78)||(3325003-3325060)
chr8 (21-81)||(3391536-3391596)
[»] scaffold0468 (1 HSPs)
scaffold0468 (21-81)||(6146-6206)
[»] chr2 (1 HSPs)
chr2 (19-81)||(22584094-22584156)


Alignment Details
Target: chr6 (Bit Score: 789; Significance: 0; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 19 - 851
Target Start/End: Complemental strand, 5354556 - 5353724
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5354556 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctccgatctccatttcaaacatctgctgccat 5354457  T
Q  119 gtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgc 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354456 gtcatctcttgtttcttttgatgtaccgagcagtagtttcaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgc 5354357  T
Q  219 aattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354356 aattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatg 5354257  T
Q  319 cacctgatatgaagacttttacattaattcaacgatgcagcgaagtgcatttttcaggatcacaacattccttcaagtctcttttaattcaaatgggaat 418  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354256 cacctgatatgaagacttttacattaattcaacgatgcagtgaagtgcatgtttcaggatcacaacattccttcaagtctcttttaattcaaatgggaat 5354157  T
Q  419 gaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtctgtctgtatgcctatcacctcatacatttgaattctttttgtgtaattct 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354156 gaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtctgtctgtatgcctatcacctcatacatttgaattctttttgtgtaattct 5354057  T
Q  519 gtaacaacacaagtaagtgtgcggaagaatgatagttttaacatatttgttagcaatgacagtttacatgacacatgcgtaagcatgcggattctctctt 618  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354056 gtaacaacacaagtaagtgtgcggaagaatgataggtttaacatatttgttagcaatgacagtttacatgacacatgcgtaagcatgcggattctctctt 5353957  T
Q  619 agttttgcatacttttacagaatttttactgaatagctaatctatataattgaaaagcttattttttataatcaaatatttctattaaaccttaacagat 718  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  5353956 agttttgcatacttttacataatttttactgaatagctaatctatgtaattgaaaagcttattttttataatcaaatttttctattaaaccttcacagat 5353857  T
Q  719 gcacaagtagtgccactgtcaagtgcagaaataacataatggctgggttgggaggttagactagaaaaaagacattcattgaaacagcatcttggttagt 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5353856 gcacaagtagtgccactgtcaagtgcagaaataacataatggctgggttgggaggttagactagaaaaaagacattcattgaaacagcatcttggttagt 5353757  T
Q  819 aactggtcatgatcttatctctgctactccact 851  Q
    ||||||||||||||||||||||| |||| ||||    
T  5353756 aactggtcatgatcttatctctgatactacact 5353724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 21 - 466
Target Start/End: Original strand, 5397091 - 5397536
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgt 120  Q
    ||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  5397091 tatgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcaccaacaattaacctcccatttccatttcaaacatctgctgccatgt 5397190  T
Q  121 catctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaa 220  Q
    |||||||| |||||||  | ||| | || ||||||||  | ||  |||||||||||||  | || |||||||| |||||||||||| | |||||||||||    
T  5397191 catctcttatttctttacacgtaacaagtagtagttcgcacgaactatcatctttttcgaaacaacttccaaggcttcgaagtctttgcgtggattgcaa 5397290  T
Q  221 ttccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatgca 320  Q
    ||| | ||||||||||||||| |||||||||| ||||||| |||| |||| ||| ||   |||||| ||||| |||||||||  |||||||||||| | |    
T  5397291 ttctgaagatcaactttctcttgatgcaaaaataattttggatgctctatgtgctacaaattctaaagaattggaatcaactaaaactacatcacaagaa 5397390  T
Q  321 cctgatatgaagacttttacattaattcaacgatg-cagcgaagtgcatttttcaggatcacaacattccttcaagtctcttttaattcaaatgggaatg 419  Q
     |  ||||||  |||| || | |||| |||  ||| || |  | ||    || |||||||| ||||||||   ||||||||||||||||||||||||| |    
T  5397391 tccaatatgactacttctaaactaatccaa-tatgacaacccaatgtccgttccaggatcaaaacattccccgaagtctcttttaattcaaatgggaacg 5397489  T
Q  420 aattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    ||||| |||||  | |||||||||||||||| |||||| ||||||||    
T  5397490 aattgtcaagttgccaatattctgaaagagataattttacaggtttg 5397536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 5157570 - 5157444
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5157570 gctatgaaggattttctcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 5157471  T
Q  119 gtcatctcttgtttcttttgatgtacc 145  Q
    ||||||||||||| |||| ||||||||    
T  5157470 gtcatctcttgttcctttagatgtacc 5157444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 5066636 - 5066184
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| ||  |||    
T  5066636 gctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttggatgtcaccaacaaataatctcccatccctatttcaaacatctactatcat 5066537  T
Q  119 gtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgc 218  Q
    | ||||||||||| |||| ||||||||    ||||| ||| ||||  |||||||  ||||  |  |||||||||| |||||||||||| ||||||| |||    
T  5066536 gccatctcttgttcctttagatgtaccacatagtagctcccatgaactatcatcaatttccaagtaccttccaagtcttcgaagtctttgggtggagtgc 5066437  T
Q  219 aattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatg 318  Q
    | ||| | | |||||||||||   ||||||| || ||| ||| ||||  |||| || ||| ||||||||||  | ||||| ||| || |||| |||||      
T  5066436 agttcagaacatcaactttctaatgatgcaacaataatattggatgctttatacgctactctttctaaggatgtggaatcgacttcagctacttcacaaa 5066337  T
Q  319 cacctgatatgaagacttttacattaattcaacgatgcagcgaagtgcatttttcaggatcacaacattccttcaagtctcttttaattcaaatgggaat 418  Q
     | |  ||||||  |||| | |||||| |||||  |||    || ||||| || |  | ||| ||| |||| | |||||| || |||| |||||||| ||    
T  5066336 tatcaaatatgataacttctgcattaactcaacattgcgatcaattgcatgttccctgttcagaactttccatgaagtctgttctaatacaaatgggtat 5066237  T
Q  419 gaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtctgt 471  Q
    ||||||||||||||| |||| ||||||||| || || || |||||||||||||    
T  5066236 gaattgccaagtcaccaataatctgaaagaaaacatgttacaggtttgtctgt 5066184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 5096850 - 5097144
Alignment:
Q  22 atgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgtc 121  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| | | |||||||||||  || ||||||    
T  5096850 atgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatccctagttcaaacatctaatgtcatgtc 5096949  T
Q  122 atctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaat 221  Q
    ||| ||||||||| | |||||||| |  ||||||||| ||||  ||| |||  ||||  |  |||||||||| |||||||||||| ||||||| ||||      
T  5096950 atcccttgtttctgtagatgtaccaaatagtagttcccatgaactattatcgatttccaagtaccttccaagtcttcgaagtctttgggtggagtgcagc 5097049  T
Q  222 tccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcaca 316  Q
    || | |  |||||||||||  |||||   || ||||||| ||||| |||||||||| | || |||||  |||||||||| ||||| |||||||||    
T  5097050 tcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcaca 5097144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 5426049 - 5426175
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |  |||    
T  5426049 gctatgaaggattttcacgtgatgtgtttccagcgatcatttggtcttggatgtcaccaacaaataatctcccatccccatttcaaacatctgatatcat 5426148  T
Q  119 gtcatctcttgtttcttttgatgtacc 145  Q
    ||||||||||||| |||| ||||||||    
T  5426149 gtcatctcttgttcctttagatgtacc 5426175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 5073850 - 5073570
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| | || |||||||| ||   |||||| ||    
T  5073850 gctatgaaggattctcacgtgatgtgttcccatcgatcatttggtcttggatgtcaccgacaaataatctcacttccccatttcagacggttgctgcaat 5073751  T
Q  119 gtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgc 218  Q
    |||||| | |||| |||| |||||||  |  ||||||||| ||||  |||||||| ||||  |  |||||||| | |||||| ||||| ||||||| |||    
T  5073750 gtcatcccatgttcctttagatgtactaaatagtagttcccatgaactatcatctatttccaattaccttccatggcttcgatgtctttgggtggaatgc 5073651  T
Q  219 aattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatca 299  Q
       ||   |  ||||||||||| ||||||| ||| ||||||| ||||| ||||||||||   |||||| ||||| ||||||    
T  5073650 ggatcaaaacttcaactttctcaagatgcagaaagaattttggatgccttatatgccacaaattctaaagaattcgaatca 5073570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 22 - 290
Target Start/End: Complemental strand, 5690098 - 5689830
Alignment:
Q  22 atgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgtc 121  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||  |||| || ||| |||||||||||||||||||    
T  5690098 atgaaggattctcacgtgatatatttccatctatcatttggtcttggatgtcaccaacaagtgctctttcatccccctttgaaacatctgctgccatgtc 5689999  T
Q  122 atctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaat 221  Q
    ||||||||||||||| ||| ||||  | ||||||||  | ||  | |||||| ||||  |||||||| |||| |||||||||||  |||| || ||   |    
T  5689998 atctcttgtttctttagatataccatgtagtagttctcaggaactgtcatctatttccaaccacctttcaaggcttcgaagtctatgggtagagtgtggt 5689899  T
Q  222 tccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaa 290  Q
    || | |  ||||||||||  |||||||||||  |||||| ||||  |||| |||||  |||||||||||    
T  5689898 tcagaacttcaactttctgaagatgcaaaaatcattttggatgctttatacgccacaatttctaaggaa 5689830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 5278705 - 5278984
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgcc-- 116  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| |  |||  |||| || |||||||||||| |||||      
T  5278705 gctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaagttctctttcatccccctttcaaacatcttctgccaa 5278804  T
Q  117 -atgtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggat 215  Q
     || ||||||||||||||||| ||| ||||    ||||||||  | ||  | |||||| |||| ||||||||| |||| |||||||||||  |||| ||     
T  5278805 tatttcatctcttgtttctttagatataccacatagtagttctcaggaactgtcatctatttccgaccacctttcaaggcttcgaagtctatgggtagag 5278904  T
Q  216 tgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttga 295  Q
    ||   ||| | |  |||||||||| ||||||||||||  |||||| ||||  ||||||||||  ||||||||||| ||||    
T  5278905 tgtggttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaatttctaaggaaattga 5278984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 5176878 - 5177157
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgcc-- 116  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| |  |||  |||| || |||||||||||| |||||      
T  5176878 gctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaagttctctttcatccccctttcaaacatcttctgccaa 5176977  T
Q  117 -atgtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggat 215  Q
     || |||||||| |||||||| ||| ||||    ||||||||  | ||  | |||||| |||| ||||||||| |||| |||||||||||  |||| ||     
T  5176978 tatttcatctctcgtttctttagatataccacatagtagttctcaggaactgtcatctatttccgaccacctttcaaggcttcgaagtctatgggtagag 5177077  T
Q  216 tgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttga 295  Q
    ||   ||| | |  |||||||||| ||||||||||||  |||||| ||||  ||||||||||  ||||||||||| ||||    
T  5177078 tgtggttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaatttctaaggaaattga 5177157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 5181867 - 5181778
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatct 110  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  5181867 tatgaaggattctcacatgatgtgtttccagcgatcatttggtcttggatgtcaccgacaaataatctcccatccccatttcaaacatct 5181778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 5257274 - 5256973
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcacc---aacaaataatctcccatctccatttcaa---acatctgctg 114  Q
    ||||||||||| ||| |   |||||||||||  ||||||| ||||||||||||| |   ||| ||| ||||||||| ||||||||||   |||||| |||    
T  5257274 tatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatgatctcccatttccatttcaaattacatcttctg 5257175  T
Q  115 ccatgtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtgga 214  Q
     | ||||||||||||||||||| ||||||||||| | |||     ||||  | |||||||||||  |||| |||||||| |||  ||||||| |||||||    
T  5257174 tcttgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatctttttcgaaccaacttccaaggcttaaaagtctttgggtgga 5257075  T
Q  215 ttgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatca 314  Q
    ||||| ||| | ||||||||||||| | ||| ||| |||||||||||||||  | ||||| |   |||||| ||||||||||||| |||| | |||||||    
T  5257074 ttgcatttctgaagatcaactttctattgattcaacaacaattttgaatgctttgtatgctagaatttctatggaatttgaatcagctgctaatacatca 5256975  T
Q  315 ca 316  Q
    ||    
T  5256974 ca 5256973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 377 - 469
Target Start/End: Original strand, 5097178 - 5097270
Alignment:
Q  377 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtct 469  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| | |||||||||||    
T  5097178 atcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtct 5097270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 5102556 - 5102309
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    ||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | | |||||||||||||  |  |||    
T  5102556 gctatgaaggactttcacatgatgtgtttccatctatcatctggtcttggatgtcaccaacaaataatcttccacccctatttcaaacatctaatatcat 5102457  T
Q  119 gtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgc 218  Q
    ||||||||||||| || | ||||||||    ||||||||| | ||  |||||||  ||||     |||||||||  |||||||||||| ||||||| |||    
T  5102456 gtcatctcttgttcctctagatgtaccacatagtagttcccacgaactatcatcgatttccatgtaccttccaaatcttcgaagtctttgggtggagtgc 5102357  T
Q  219 aattccgtagatcaactttctctagatgcaaaaacaattttgaatgcc 266  Q
    | ||| | |  |||||||||||  ||||||  || ||||||| |||||    
T  5102356 agttcagaacgtcaactttctcatgatgcagcaataattttggatgcc 5102309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 5128356 - 5128233
Alignment:
Q  22 atgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgtc 121  Q
    |||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | | |||||||||||||  |  ||||||    
T  5128356 atgaaggattttcaagtgatgtgtttccatctatcatctggtcttggatgtcaccaacaaatgatctcccacccctatttcaaacatctaatatcatgtc 5128257  T
Q  122 atctcttgtttcttttgatgtacc 145  Q
    |||||||||| || | ||||||||    
T  5128256 atctcttgttcctctagatgtacc 5128233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 5383468 - 5383618
Alignment:
Q  22 atgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctcca-tttcaaacatctgctgccatgt 120  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||||||||||  |||||||||||||||||| |||| ||||||||||| |||  |||||    
T  5383468 atgaaggattctcacgtgatgtgtttccatccatcattaagtcttggatgtcctcaacaaataatctcccat-tccattttcaaacatcagctatcatgt 5383566  T
Q  121 catctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatc 172  Q
    |||||| |||| |||| ||||||||  | ||||||||| ||||  |||||||    
T  5383567 catctcatgttcctttcgatgtaccacgtagtagttcccatgacctatcatc 5383618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 19 - 468
Target Start/End: Complemental strand, 5243855 - 5243405
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    ||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||| |  |||  |||| | | ||||||||||| |||| ||    
T  5243855 gctatgaaggattttcacgcgatgtatttccatctatcatctggtcttggatgtcaccaacaagttctctttcatcccaagttcaaacatctcctgcgat 5243756  T
Q  119 gtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgc 218  Q
    ||||||||| |||||||| ||| |||||   ||||| ||| | ||| | ||| || ||||   ||||||| |||| |||||||| ||   ||| || ||     
T  5243755 gtcatctctggtttctttagatataccgcatagtagctcccaagagctgtcaactatttccatccacctttcaaggcttcgaagcctattggtagagtgt 5243656  T
Q  219 aattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctat-atgccactgtttctaaggaatttgaatcaactgcaactacatcacat 317  Q
       || | |   |||||||||  ||||||| |||  |||||| ||||| ||| |  ||||  ||||||||||| | ||||| ||| || |||| |||||     
T  5243655 ggctcagaactacaactttctgaagatgcacaaatcattttggatgccttataacaccacattttctaaggaaatggaatcgacttcagctacttcacaa 5243556  T
Q  318 gcacctgatatgaagacttttacattaattcaacgatgcagcgaagtgcatttttcaggatcacaacattccttcaagtctcttttaattcaaatgggaa 417  Q
    ||| |  ||||||| |||| | ||||||||||||| ||||   || ||||  ||||  ||||| || ||| ||| |||||| || |||| ||||||||||    
T  5243555 gcatcaaatatgaaaacttctgcattaattcaacgttgcaatcaattgcaagtttccagatcagaagattacttaaagtctgttctaatacaaatgggaa 5243456  T
Q  418 tgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtc 468  Q
    ||||||||||||| || |||| ||| ||||| || ||||| ||||||||||    
T  5243455 tgaattgccaagtaaccaataatctaaaagaaaacattttacaggtttgtc 5243405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 5350828 - 5350917
Alignment:
Q  377 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  5350828 atcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagagataattttacaggtttg 5350917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 26 - 316
Target Start/End: Original strand, 5370717 - 5371007
Alignment:
Q  26 aggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgtcatct 125  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||| |  |   |||||||||    
T  5370717 aggattttcacatgatgtttttccatctatcatttggtcttggatgtcaccaacaaattatctcccacccctatttcaaacatgtaatatgatgtcatct 5370816  T
Q  126 cttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccg 225  Q
    |||||| |||| ||||||||    ||||||||| ||||  |||||||  |||   |  |||||||||  |||||||||||| ||||||| || |  || |    
T  5370817 cttgttcctttagatgtaccacatagtagttcccatgaactatcatcaattttcaagtaccttccaattcttcgaagtctttgggtggaatgtagctcgg 5370916  T
Q  226 tagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcaca 316  Q
     |  |||||||||||  ||||||  |||||||||| ||| | ||||||| |  | || ||||||  | ||| ||||||||| |||||||||    
T  5370917 aacttcaactttctcatgatgcagcaacaattttggatgtcttatatgcgatagattataaggagatggaaccaactgcaattacatcaca 5371007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 5102255 - 5102166
Alignment:
Q  377 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||| ||||||||    
T  5102255 atcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggtttg 5102166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 5137307 - 5137218
Alignment:
Q  377 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||| ||||||||    
T  5137307 atcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggtttg 5137218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 39 - 274
Target Start/End: Complemental strand, 5284311 - 5284073
Alignment:
Q  39 gatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaa---catctgctgccatgtcatctcttgtttctt 135  Q
    |||||||||||||  || |||| ||| ||||||||| |||||||||||||||||| |||||||||||   | ||| |||  |||||||||||||||||||    
T  5284311 gatgtgtttccattaataattttgtcatggatgtcagcaacaaataatctcccatttccatttcaaatttcttcttctgaaatgtcatctcttgtttctt 5284212  T
Q  136 ttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaact 235  Q
    | ||||||||||| | |||     ||||  | ||||||||||   |||  |||||| | |||| ||||||| ||||||||||||| |||| |||||||||    
T  5284211 tagatgtaccgagtaatagaatacatgaactttcatcttttttgtaccgacttccatggcttcaaagtctttgggtggattgcaactccgaagatcaact 5284112  T
Q  236 ttctctagatgcaaaaacaattttgaatgccctatatgc 274  Q
    |||||| ||| ||| ||  |||||| ||||  |||||||    
T  5284111 ttctcttgattcaacaatgattttggatgctttatatgc 5284073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 5157239 - 5157150
Alignment:
Q  377 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    |||| |||||||||  |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||| ||||||||    
T  5157239 atcaaaacattcctcgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggtttg 5157150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 5345000 - 5345445
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |  |||  |||    | |||||| |||| |||| ||    
T  5345000 gctatgaaggattctcacgcgatgtatttccatctatcatctggtcttggatgtcaccaacaagttctctttcattcgaagttcaaatatctcctgcgat 5345099  T
Q  119 gtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgc 218  Q
    ||||||||| |||||||| ||| ||||    ||||| ||| | ||  | ||| || ||||  |||||||| |||| |||||||||||  |||| || ||     
T  5345100 gtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagtgt 5345199  T
Q  219 aattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatg 318  Q
       || | |   |||||||||  ||||||| |||  |||||| ||||  |||| |||||  ||||||||||| | ||||| | | || |||| ||||| |    
T  5345200 ggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaaggaaatggaatcgatttcagctacttcacaag 5345299  T
Q  319 cacctgatatgaagacttttacattaattcaacgatgcagcgaagtgcatttttcaggatcacaacattccttcaagtctcttttaattcaaatgggaat 418  Q
    || | |||||||| |||| | ||||||||||||| ||||   || ||||   |||  ||||| || ||| ||| |||||| || |||| |||||||||||    
T  5345300 catcagatatgaaaacttctgcattaattcaacgctgcattcaattgcacggttccagatcagaagattacttaaagtctgttctaatacaaatgggaat 5345399  T
Q  419 gaattgccaagtcactaatattctgaaagagaaaattttgcaggtt 464  Q
    ||||| |||||| || |||| ||| ||||| || ||||| ||||||    
T  5345400 gaatttccaagtaaccaataatctaaaagaaaacattttacaggtt 5345445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 5350533 - 5350653
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    ||||||||||||| |||||||||||||||      ||||||   ||||||||||||||||||||||||| |||||| ||||||||||||||||    |||    
T  5350533 gctatgaaggattttcacgtgatgtgttt------atcattcattcttggatgtcaccaacaaataatcacccatccccatttcaaacatctgacatcat 5350626  T
Q  119 gtcatctcttgtttcttttgatgtacc 145  Q
    ||||||||||||| |||| ||||||||    
T  5350627 gtcatctcttgttcctttagatgtacc 5350653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 5426350 - 5426439
Alignment:
Q  377 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    |||| |||||||||| || ||||||||||||||||| |||||||||||||||| | || ||||||||||||||| |||||| ||||||||    
T  5426350 atcaaaacattccttaaaatctcttttaattcaaattggaatgaattgccaagcctctgatattctgaaagagataattttacaggtttg 5426439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 230 - 466
Target Start/End: Original strand, 5434538 - 5434774
Alignment:
Q  230 tcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatgcacctgatatg 329  Q
    ||||||||||  ||||||||| | ||||||| ||||| || |||||||    ||||| ||||  | | | ||| ||||||||||||| | | |  |||||    
T  5434538 tcaactttctgaagatgcaaagataattttggatgccttacatgccacaaactctaaagaatccgtaccgactacaactacatcacaagtatcaaatatg 5434637  T
Q  330 aagacttttacattaattcaacgatgcagcgaagtgcatttttcaggatcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaag 429  Q
    |  |||| ||||||  ||||| | ||||| ||||||||  ||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||     
T  5434638 actacttctacattggttcaaagctgcagtgaagtgcacgttttaggatcaaaacattccttcaactctcttttaattcaaatgagaatgaattgcaaac 5434737  T
Q  430 tcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    |||| || |||||  ||||||  ||||| ||||||||    
T  5434738 tcaccaacattctcgaagagatcattttacaggtttg 5434774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 384 - 463
Target Start/End: Original strand, 5448028 - 5448107
Alignment:
Q  384 cattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggt 463  Q
    |||| ||| |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||| |||||    
T  5448028 catttcttgaagtctcttttaattcaaattggaatgaattgcgaagtcactgatattctgaaagagataattttacaggt 5448107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 60 - 266
Target Start/End: Complemental strand, 5137567 - 5137361
Alignment:
Q  60 tggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgtcatctcttgtttcttttgatgtaccgagcagtagttcca 159  Q
    ||||||||||||||||||||||||||||||||| | | |||||||||||||  |  |||||||||||||||| || | ||||||||    |||||||||     
T  5137567 tggtcttggatgtcaccaacaaataatctcccacccctatttcaaacatctaatatcatgtcatctcttgttcctctagatgtaccacatagtagttccc 5137468  T
Q  160 atgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaatttt 259  Q
    | ||  |||||||  |||  |   |||||||||| |||||||||||| ||||||| |||| ||| | |  |||||||||||  ||||||  || ||||||    
T  5137467 acgaactatcatcgattttcgtgtaccttccaagtcttcgaagtctttgggtggagtgcagttcagaacgtcaactttctcatgatgcagcaataatttt 5137368  T
Q  260 gaatgcc 266  Q
    | |||||    
T  5137367 ggatgcc 5137361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 5371041 - 5371130
Alignment:
Q  377 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    |||| |||||||||  | |||||||||||||||||| ||||||||||||| | | ||||||||||||||||||| |||||| ||||||||    
T  5371041 atcaaaacattcctcaacgtctcttttaattcaaattggaatgaattgccgaataactaatattctgaaagagataattttacaggtttg 5371130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 5128028 - 5127939
Alignment:
Q  377 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    |||| |||||||||  ||||| || ||||||||||| |||| ||||||||||||||||||||||||||||| ||  ||||| ||||||||    
T  5128028 atcaaaacattcctcgaagtcgctattaattcaaattggaaagaattgccaagtcactaatattctgaaagggattattttacaggtttg 5127939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 5434176 - 5434243
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatct 88  Q
    ||||||||||||||||  ||| | ||||||| |||||||  |||||||||||||||||||||||||||    
T  5434176 tatgaaggattctcacacgatttatttccatttatcattcagtcttggatgtcaccaacaaataatct 5434243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 5447730 - 5447793
Alignment:
Q  23 tgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 86  Q
    |||||||| ||| | |||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  5447730 tgaaggatcctcgcatgatgtgtttccatctattattcggtcttggatgtcaccaagaaataat 5447793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 396 - 465
Target Start/End: Complemental strand, 5181543 - 5181474
Alignment:
Q  396 tctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggttt 465  Q
    ||||| || |||||||| |||||||||||||||||||| |||||||||| ||| || ||||| |||||||    
T  5181543 tctctgtttattcaaataggaatgaattgccaagtcaccaatattctgagagataacattttacaggttt 5181474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 402 - 466
Target Start/End: Complemental strand, 5256950 - 5256889
Alignment:
Q  402 ttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    ||||||||||||||||| |||||||| ||||| |||||||| ||||||   ||||||||||||||    
T  5256950 ttaattcaaatgggaataaattgccatgtcaccaatattctcaaagag---attttgcaggtttg 5256889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 5179680 - 5179731
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggat 70  Q
    ||||| |||||||||||||||||||  |||||| ||||||| ||||||||||    
T  5179680 gctataaaggattctcacgtgatgtagttccatatatcattcggtcttggat 5179731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 5281439 - 5281490
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggat 70  Q
    ||||| |||||||||||||||||||  |||||| ||||||| ||||||||||    
T  5281439 gctataaaggattctcacgtgatgtagttccatatatcattcggtcttggat 5281490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 5284007 - 5283961
Alignment:
Q  402 ttaattcaaatgggaatgaattgccaagtcactaatattctgaaaga 448  Q
    |||||||||||||||||||||| |||||||||  ||||||| |||||    
T  5284007 ttaattcaaatgggaatgaatttccaagtcaccgatattctcaaaga 5283961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 83
Target Start/End: Original strand, 2938282 - 2938311
Alignment:
Q  54 atcatttggtcttggatgtcaccaacaaat 83  Q
    ||||||||||||||||||||||||||||||    
T  2938282 atcatttggtcttggatgtcaccaacaaat 2938311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 721
Target Start/End: Complemental strand, 5136929 - 5136868
Alignment:
Q  661 tatataattgaaaagcttatt-ttttataatcaaatatttctattaaaccttaacagatgca 721  Q
    ||||||||||||| ||||||| |||||||| ||| | ||| |||||||||| ||||||||||    
T  5136929 tatataattgaaatgcttatttttttataagcaattgtttttattaaacctcaacagatgca 5136868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 5383776 - 5383845
Alignment:
Q  396 tctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggttt 465  Q
    |||||||| |||||||||||||||||||| ||| |  | ||||||||||||||  |||| || |||||||    
T  5383776 tctcttttcattcaaatgggaatgaattgtcaaattgcaaatattctgaaagatcaaatcttacaggttt 5383845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 8877748 - 8878186
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||   |   | ||||||||||||||| |  | ||    
T  8877748 gctatgaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataattaacagcccccatttcaaacatctaccactat 8877847  T
Q  119 gtcatctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgc 218  Q
    ||||||||| |||||||| ||||||||    ||||||||| |  |  || ||||  | ||  | ||||||||| | |||||||||||| | ||||| ||     
T  8877848 gtcatctctagtttctttagatgtaccatatagtagttcccacaaactagcatcaatatcaaagcaccttccaggtcttcgaagtctttgagtggagtgt 8877947  T
Q  219 aattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcacatg 318  Q
       |||  |  || | |||||| |||||  | ||| |||||| ||||| | |||||||         ||||||| |||||| |||| ||||||||||| |    
T  8877948 ggatccaaacttcgattttctcaagatgtgacaaccattttggatgccttgtatgcca---------aggaattggaatcagctgctactacatcacaag 8878038  T
Q  319 cacctgatatgaagacttttacattaattcaacgatgcagcgaagtgcatttttcaggatcacaacattccttcaagtctcttttaattcaaatgggaat 418  Q
     | |  |||| || |||| | |||||||||||   |||||  |||||||| ||||||| ||| ||  |||| | |||||||| || ||||||||||||||    
T  8878039 tatcaaatataaaaacttctgcattaattcaattctgcagtcaagtgcatgtttcaggttcaaaaagttccctgaagtctctatttattcaaatgggaat 8878138  T
Q  419 gaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 466  Q
    |||||||||| | ||||||| |||||||||||||||||| ||||||||    
T  8878139 gaattgccaattaactaatactctgaaagagaaaattttacaggtttg 8878186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 20812421 - 20812476
Alignment:
Q  24 gaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 79  Q
    |||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  20812421 gaaggattatcacgtgatgtttttccttctctcatttggtcttggatgtcaccaac 20812476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 12599112 - 12599054
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 79  Q
    ||||||||||| ||||||||||| ||||| ||| ||| |||||||||||||||||||||    
T  12599112 tatgaaggattatcacgtgatgtttttccttctctcaattggtcttggatgtcaccaac 12599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 20838773 - 20838831
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 79  Q
    ||||||||||| |||| |||||| ||||| ||| |||||||||||||||||||||||||    
T  20838773 tatgaaggattatcacatgatgtttttccttctctcatttggtcttggatgtcaccaac 20838831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 8839 - 8649
Alignment:
Q  22 atgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgtc 121  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||   |||||||||||| ||  ||||||    
T  8839 atgaaggattctcacgtgatgtgtttccatctatcattaagtcttggatgtctccaacaaataatctcccatcttactttcaaacatctactatcatgtc 8740  T
Q  122 atctcttgtttcttttgatgtaccgagcagtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtg 212  Q
    ||||| |||| |||| ||||||||  | ||||||||| | ||  |||||||  ||||  |  ||||||||||  ||||||||||| |||||    
T  8739 atctcatgttcctttagatgtaccacgtagtagttcccaggaactatcatcaatttccaagtaccttccaagtattcgaagtctttgggtg 8649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 385 - 465
Target Start/End: Complemental strand, 8558 - 8478
Alignment:
Q  385 attccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggttt 465  Q
    |||||| ||| |||||||| |||| ||||||||||||||| |||||  | ||||||||||||| |  |||||| |||||||    
T  8558 attcctccaaatctcttttcattccaatgggaatgaattgtcaagttgcaaatattctgaaagggctaattttacaggttt 8478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 47986814 - 47986716
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgcca 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  || |||||||||    
T  47986814 gctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgcca 47986716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 47996101 - 47996003
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgcca 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  || |||||||||    
T  47996101 gctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgcca 47996003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 48005388 - 48005290
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgcca 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  || |||||||||    
T  48005388 gctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgcca 48005290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 48014673 - 48014575
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgcca 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  || |||||||||    
T  48014673 gctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgcca 48014575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 150 - 316
Target Start/End: Complemental strand, 47986712 - 47986546
Alignment:
Q  150 agtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaa 249  Q
    ||||||||| ||||  |||| || |||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| |||||||    
T  47986712 agtagttcccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaa 47986613  T
Q  250 aaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcaca 316  Q
    |||  |||||| ||||  ||  |||||| |||| |||||| || ||||||| |||||| ||||||||    
T  47986612 aaaatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcaca 47986546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 150 - 316
Target Start/End: Complemental strand, 47995999 - 47995833
Alignment:
Q  150 agtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaa 249  Q
    ||||||||| ||||  |||| || |||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| |||||||    
T  47995999 agtagttcccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaa 47995900  T
Q  250 aaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcaca 316  Q
    |||  |||||| ||||  ||  |||||| |||| |||||| || ||||||| |||||| ||||||||    
T  47995899 aaaatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcaca 47995833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 150 - 316
Target Start/End: Complemental strand, 48005286 - 48005120
Alignment:
Q  150 agtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaa 249  Q
    ||||||||| ||||  |||| || |||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| |||||||    
T  48005286 agtagttcccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaa 48005187  T
Q  250 aaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcaca 316  Q
    |||  |||||| ||||  ||  |||||| |||| |||||| || ||||||| |||||| ||||||||    
T  48005186 aaaatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcaca 48005120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 150 - 316
Target Start/End: Complemental strand, 48014571 - 48014405
Alignment:
Q  150 agtagttccaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaa 249  Q
    ||||||||| ||||  |||| || |||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| |||||||    
T  48014571 agtagttcccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaa 48014472  T
Q  250 aaacaattttgaatgccctatatgccactgtttctaaggaatttgaatcaactgcaactacatcaca 316  Q
    |||  |||||| ||||  ||  |||||| |||| |||||| || ||||||| |||||| ||||||||    
T  48014471 aaaatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcaca 48014405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 6905866 - 6905806
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 81  Q
    ||||||||||| ||||||||| | ||||| ||| |||||||||||||||||||||||||||    
T  6905866 tatgaaggattatcacgtgatatttttccttctctcatttggtcttggatgtcaccaacaa 6905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 32411143 - 32411083
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 81  Q
    ||||||||||| |||| ||| || ||||| ||| |||||||||||| ||||||||||||||    
T  32411143 tatgaaggattatcacatgaagtatttccctctctcatttggtcttagatgtcaccaacaa 32411083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 47986519 - 47986477
Alignment:
Q  370 tttcaggatcacaacattccttcaagtctcttttaattcaaat 412  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  47986519 tttcaggatcaaaatattccttcaaatctcttttaattcaaat 47986477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 47995806 - 47995764
Alignment:
Q  370 tttcaggatcacaacattccttcaagtctcttttaattcaaat 412  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  47995806 tttcaggatcaaaatattccttcaaatctcttttaattcaaat 47995764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 48005093 - 48005051
Alignment:
Q  370 tttcaggatcacaacattccttcaagtctcttttaattcaaat 412  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  48005093 tttcaggatcaaaatattccttcaaatctcttttaattcaaat 48005051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 48014378 - 48014336
Alignment:
Q  370 tttcaggatcacaacattccttcaagtctcttttaattcaaat 412  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  48014378 tttcaggatcaaaatattccttcaaatctcttttaattcaaat 48014336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 36213771 - 36213659
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccat 118  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| |  | ||||||||||||| ||  |||    
T  36213771 gctatgaaggattctcacatgatgtgtttccatctatcatttggtcttggatgtcaccaacaaatgttctcccgttccgatttcaaacatctactatcat 36213672  T
Q  119 gtcatctcttgtt 131  Q
    |||||||||||||    
T  36213671 gtcatctcttgtt 36213659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 465
Target Start/End: Complemental strand, 36213462 - 36213382
Alignment:
Q  385 attccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggttt 465  Q
    ||||||| || ||| |||| |||||||||||||||||||||||| |  | |||||| |||||||||||||| | |||||||    
T  36213462 attccttgaaatcttttttcattcaaatgggaatgaattgccaactttccaatattttgaaagagaaaattgtacaggttt 36213382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 4344787 - 4344902
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgt 120  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| |  |  | ||||||||| ||||||  ||||    
T  4344787 tatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgt 4344886  T
Q  121 catctcttgtttcttt 136  Q
    |||| |||||||||||    
T  4344887 catcgcttgtttcttt 4344902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 4123879 - 4123808
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctccca 92  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||    
T  4123879 tatgaaggattctctcgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataatctccca 4123808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 4361218 - 4361329
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgccatgt 120  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||| |  |  | ||||||||| ||||||  ||||    
T  4361218 tatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgt 4361317  T
Q  121 catctcttgttt 132  Q
    |||| |||||||    
T  4361318 catcccttgttt 4361329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 4320559 - 4320502
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaa 78  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4320559 tatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaa 4320502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 4335486 - 4335551
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 86  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||  |||||||||||||    
T  4335486 tatgaaggattctcccgtgatgtgtttccttctataatttggtcttggatggtaccaacaaataat 4335551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 6498462 - 6498401
Alignment:
Q  25 aaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 86  Q
    ||||||| ||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||    
T  6498462 aaggattttcacgtgatgtatttccttctctcattcggtcttggatgtcaccatcaaataat 6498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 6532170 - 6532111
Alignment:
Q  23 tgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaa 82  Q
    ||||||||| |||  |||||| ||||| ||||||||| ||||||||||||||||| ||||    
T  6532170 tgaaggattttcaaatgatgtatttccttctatcattcggtcttggatgtcaccatcaaa 6532111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 6545386 - 6545323
Alignment:
Q  23 tgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 86  Q
    ||||||||| ||||||||||| || || ||| ||||| |||||||| |||||||| ||||||||    
T  6545386 tgaaggattttcacgtgatgtattcccttctctcattcggtcttggctgtcaccatcaaataat 6545323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 6588134 - 6588071
Alignment:
Q  23 tgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 86  Q
    ||||||||| ||||||||||| || || ||| ||||| ||||||||||||| ||| ||||||||    
T  6588134 tgaaggattttcacgtgatgtattcccttctctcattcggtcttggatgtcgccatcaaataat 6588071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 6675846 - 6675909
Alignment:
Q  23 tgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 86  Q
    ||||||||| |||| |||||| ||||| ||| |||||  |||||||||||||||| ||||||||    
T  6675846 tgaaggattttcacttgatgtatttccttctctcattaagtcttggatgtcaccatcaaataat 6675909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 4133348 - 4133290
Alignment:
Q  27 ggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataa 85  Q
    |||| ||||||||| || ||||| |||||||||  | ||||||||||||||||||||||    
T  4133348 ggatactcacgtgaagtatttccttctatcattcagacttggatgtcaccaacaaataa 4133290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 450
Target Start/End: Complemental strand, 4320193 - 4320139
Alignment:
Q  396 tctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagaga 450  Q
    ||||||||| |||||||||||||||| | || | |||| ||||||||||||||||    
T  4320193 tctcttttatttcaaatgggaatgaactccctaatcaccaatattctgaaagaga 4320139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 3407379 - 3407323
Alignment:
Q  25 aaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 81  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  3407379 aaggattatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaacaa 3407323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 3262682 - 3262629
Alignment:
Q  26 aggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 79  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  3262682 aggattttcacgtgatgtttttccctctatcatttggtcttggatgtcaccaac 3262629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 3314999 - 3315056
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaa 78  Q
    |||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  3314999 tatgaaggtttatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaa 3315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 3286575 - 3286516
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaaca 80  Q
    ||||||||||| |||| |||||| |||| |||| ||||| ||||||||||||||||||||    
T  3286575 tatgaaggattatcacatgatgtttttcaatctctcattaggtcttggatgtcaccaaca 3286516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 31175988 - 31176046
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 79  Q
    ||||||||||| ||| |||| || ||||| ||| |||||||||||||||||||||||||    
T  31175988 tatgaaggattatcatgtgacgtttttccttctctcatttggtcttggatgtcaccaac 31176046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 3325060 - 3325003
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaa 78  Q
    ||||||||| | ||||  ||||| ||||| ||||||||||||||||||||||||||||    
T  3325060 tatgaaggactatcacacgatgtttttccttctatcatttggtcttggatgtcaccaa 3325003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 3391596 - 3391536
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 81  Q
    ||||||||||| |||| | |||| ||||| ||| ||||| |||||||||||||||||||||    
T  3391596 tatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgtcaccaacaa 3391536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 6206 - 6146
Alignment:
Q  21 tatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 81  Q
    ||||||||||| ||||||||||| ||||| ||  | |||||||||||||||||||||||||    
T  6206 tatgaaggattatcacgtgatgtttttccttcccttatttggtcttggatgtcaccaacaa 6146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 22584156 - 22584094
Alignment:
Q  19 gctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 81  Q
    ||||||||||| ||| | | |||||  |||||||||| |||||||||||||||||| ||||||    
T  22584156 gctatgaaggactcttaagcgatgtagttccatctatgatttggtcttggatgtcatcaacaa 22584094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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