View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8407_low_10 (Length: 369)
Name: NF8407_low_10
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8407_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 33034594 - 33034245
Alignment:
| Q |
17 |
agatacggcaataatttgtaggaaaaaatagatgatataatcacatgtatagaagtgtatttcaactaaagtgtaaagtgctagatagatctgtccacca |
116 |
Q |
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| T |
33034594 |
agatacggcaataatttgtaggaaaaaatagatgatataatcacatgtatagaagtgtatttcaactaaagtgtaaagtgctagatagatctgtccacca |
33034495 |
T |
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| Q |
117 |
tactataagacattcattcagtcagcactaagactcaaaaagggcagcaaagtttcgacaacaaacaaatggc-nnnnnnnttggaccagaaggtgttag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
33034494 |
tactataagacattcattcagtcagcactaagactcaaaaagggcagcaaagtttcgacaacaaacaaatggcaaaaaaaattggacaagaaggtgttag |
33034395 |
T |
|
| Q |
216 |
agaatatatttcaattgcttatcaaagtcaatagnnnnnnnttactttacaaaaactgctgattcctgtccaatgtccatttgcctctttttgaacttgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33034394 |
agaatatatttcaattgcttatcaaagtcaatagaaaaaaattactttacaaaaactgctgattcctgtccaatgtccatttgcctctttttgaacttgg |
33034295 |
T |
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| Q |
316 |
agagtatctgatgcaaaatattgcaaagctgcagaaaaaatatcatttca |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33034294 |
agagtatctgatgcaaaatattgcaaagctgcagaaaaaatatcatttca |
33034245 |
T |
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