View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8407_low_15 (Length: 264)
Name: NF8407_low_15
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8407_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 30214329 - 30214189
Alignment:
| Q |
8 |
aattcatactcaactatagtgagagtgggtgggtttgcacaggcgcacgtgcttgtggaataaaatattcatattcatgataaaacaataaattcaaggt |
107 |
Q |
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| T |
30214329 |
aattcatattcaactatagtgagagtgggtgggtttgcacaggcgcacgtgcttgtggaataaaatattcatattcatgataaaacaataaattcaaggt |
30214230 |
T |
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| Q |
108 |
aaagtcttaagctagggagagacttgtgtattttttaaaag |
148 |
Q |
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| T |
30214229 |
aaagtcttaagcttgggagagacttgtgtattttttaaaag |
30214189 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 30213795 - 30213719
Alignment:
| Q |
144 |
aaaagtcaaaacactaaatctctttattttatcgtaaccatcaaatgacataaacatactcaaaatttcatcatctt |
220 |
Q |
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| T |
30213795 |
aaaagtcaaaacactaaatttccttattttatcgtaaccatcaaatgacataaacatactcaaattttcattatctt |
30213719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 46897262 - 46897299
Alignment:
| Q |
166 |
tttattttatcgtaaccatcaaatgacataaacatact |
203 |
Q |
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| T |
46897262 |
tttatttgattgtaaccatcaaatgacataaacatact |
46897299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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