View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8407_low_16 (Length: 250)

Name: NF8407_low_16
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8407_low_16
NF8407_low_16
[»] chr7 (2 HSPs)
chr7 (99-250)||(7985135-7985286)
chr7 (11-48)||(7985103-7985140)
[»] chr3 (3 HSPs)
chr3 (121-157)||(31502154-31502190)
chr3 (124-158)||(27612021-27612055)
chr3 (119-159)||(39553856-39553896)
[»] scaffold0022 (1 HSPs)
scaffold0022 (126-159)||(144825-144858)
[»] chr2 (3 HSPs)
chr2 (121-158)||(34960306-34960343)
chr2 (125-161)||(6700449-6700485)
chr2 (121-157)||(36705588-36705624)
[»] chr8 (2 HSPs)
chr8 (126-158)||(8937692-8937724)
chr8 (126-158)||(30506232-30506264)
[»] chr1 (1 HSPs)
chr1 (126-158)||(47443544-47443576)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 7985135 - 7985286
Alignment:
Q  99 caaaaactacaatagcacgcgtcaccgtgattctgccaaactcaccgtcaatccaaacatacattgagttgaattttgctaaaacaatacatcagatcat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7985135 caaaaactacaatagcacgcgtcaccgtgattctgccaaactcaccgtcaatccaaacatacattgagttgaattttgccaaaacaatacatcagatcat 7985234  T
Q  199 tgtcttatacgttacaataacgtaaagacaatttcaaatactatataatcca 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7985235 tgtcttatacgttacaataacgtaaagacaatttcaaatactatataatcca 7985286  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 7985103 - 7985140
Alignment:
Q  11 cagagacactaaaatgatggatctcaatttgacaaaaa 48  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7985103 cagagacaataaaatgatggatctcaatttgacaaaaa 7985140  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 31502190 - 31502154
Alignment:
Q  121 caccgtgattctgccaaactcaccgtcaatccaaaca 157  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31502190 caccgtgattctgccaaactcactgtcaatccaaaca 31502154  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 27612021 - 27612055
Alignment:
Q  124 cgtgattctgccaaactcaccgtcaatccaaacat 158  Q
    ||||||||||||||| |||||||||||||||||||    
T  27612021 cgtgattctgccaaattcaccgtcaatccaaacat 27612055  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 39553856 - 39553896
Alignment:
Q  119 gtcaccgtgattctgccaaactcaccgtcaatccaaacata 159  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  39553856 gtcaccgtgattttaccaaactcactgtcaatccaaacata 39553896  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 144858 - 144825
Alignment:
Q  126 tgattctgccaaactcaccgtcaatccaaacata 159  Q
    ||||||||||||||||||||||||| ||||||||    
T  144858 tgattctgccaaactcaccgtcaattcaaacata 144825  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 34960306 - 34960343
Alignment:
Q  121 caccgtgattctgccaaactcaccgtcaatccaaacat 158  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  34960306 caccgtgattctgtcaaactcaccgtgaatccaaacat 34960343  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 6700485 - 6700449
Alignment:
Q  125 gtgattctgccaaactcaccgtcaatccaaacataca 161  Q
    |||||||||||||| |||||||||| |||||||||||    
T  6700485 gtgattctgccaaattcaccgtcaaaccaaacataca 6700449  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 36705588 - 36705624
Alignment:
Q  121 caccgtgattctgccaaactcaccgtcaatccaaaca 157  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  36705588 caccctgattctaccaaactcaccgtcaatccaaaca 36705624  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 8937692 - 8937724
Alignment:
Q  126 tgattctgccaaactcaccgtcaatccaaacat 158  Q
    ||||||||||||| |||||||||||||||||||    
T  8937692 tgattctgccaaattcaccgtcaatccaaacat 8937724  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 30506264 - 30506232
Alignment:
Q  126 tgattctgccaaactcaccgtcaatccaaacat 158  Q
    ||||||||||||||||||||| |||||||||||    
T  30506264 tgattctgccaaactcaccgttaatccaaacat 30506232  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 47443544 - 47443576
Alignment:
Q  126 tgattctgccaaactcaccgtcaatccaaacat 158  Q
    ||||||||||||||||||||| |||||||||||    
T  47443544 tgattctgccaaactcaccgtgaatccaaacat 47443576  T

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