View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8407_low_17 (Length: 214)
Name: NF8407_low_17
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8407_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 2535260 - 2535079
Alignment:
| Q |
15 |
atgaatgttgttcaaagttcatgtaaacaattaagttttctttgagaaaaacaattaagttttctaaatagcaatgttaacagaaaacgattgaagtata |
114 |
Q |
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| T |
2535260 |
atgaatgttgttcaaagttcatgtaaacaattaagttttctttgagaaaaacaattaagttttctaaatagcaatgttaacagaaaaggattgaagtata |
2535161 |
T |
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| Q |
115 |
agttatacttcctcaaagattcaaacacgacgggaaaggcataacagagcaacaacagcagcaagaggaacatgatagtggt |
196 |
Q |
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| T |
2535160 |
agttatacttcctcaaatattcaaacacgacgggaaaggcataacagagcaacaacagcagcaagaggatcatgatagtggt |
2535079 |
T |
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Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 11446988 - 11447075
Alignment:
| Q |
15 |
atgaatgttgttcaaagttcatgtaaacaattaagttttctttgagaaaaacaattaagttttctaaatagcaatgttaacagaaaac |
102 |
Q |
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| T |
11446988 |
atgaatgttgttcaaagttcatgtaaacaattaagttttctttgagcaaaacaattaagttttctaaatagcaatgttaacagaaaac |
11447075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 11447743 - 11447779
Alignment:
| Q |
160 |
agagcaacaacagcagcaagaggaacatgatagtggt |
196 |
Q |
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| T |
11447743 |
agagcaacaacagcagcaagaggaacatgatagtggt |
11447779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 47563618 - 47563702
Alignment:
| Q |
82 |
atagcaatgtta--acagaaaacgattgaagtataagttatactt-cctcaaagattcaaacacgacgggaaaggcataacagag |
163 |
Q |
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| T |
47563618 |
atagcaatgttattacagcaaacgattgaagtataagttatactttcctcaaagattcaaacgtgacggaaaaggcataacagag |
47563702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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