View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8407_low_2 (Length: 640)
Name: NF8407_low_2
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8407_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 216 - 564
Target Start/End: Complemental strand, 5618356 - 5618006
Alignment:
| Q |
216 |
gtgattgtttccattctttattttctttgatcaagcaataaaagaaaagtcgcgaaattcatatacattttcattaaaattgattgatcaacggtataag |
315 |
Q |
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| T |
5618356 |
gtgattgtttccattctttattttctttgatcaagcaataaaaaaaaagtcgcgaaattcatatacattttcattaaaattgattgatcatcggtataag |
5618257 |
T |
|
| Q |
316 |
gtgtcacgaaatggttgagctagtaaagtttcatacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaatttaatgacagttagtatc |
415 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5618256 |
gtgtcacgaaatggttgagctagtaaagtttcgtacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaatttaatgacagttaatatc |
5618157 |
T |
|
| Q |
416 |
atttttaatttagttgttacccagacaagtgcacttaagactaatgggagtttctgcattttaatgtcttcacttgcagaaatatttcgacatttatctt |
515 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5618156 |
atttttaatttagttgttatccagacaattgcacttaagactaatgggagtttctgcattttaatgtcttcacttgcagaaatatttcgacatttatctt |
5618057 |
T |
|
| Q |
516 |
aacaaatgttgtctttattaatttatcaagataat--actatcatttaagt |
564 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5618056 |
aacaaatgttgtctttattaatttatcaagataatacactatcatttaagt |
5618006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 5617749 - 5617692
Alignment:
| Q |
564 |
tctacctacacaaaatgattatatcttctgattcttccaaacaccggtaactcagaaa |
621 |
Q |
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| T |
5617749 |
tctacctacacaaaatgattatatcttctgattcttccagacaccggtaactcagaaa |
5617692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 216 - 564
Target Start/End: Original strand, 22819543 - 22819893
Alignment:
| Q |
216 |
gtgattgtttccattctttattttctttgatcaagcaataaaagaaaagtcgcgaaattcatatacattttcattaaaattgattgatcaacggtataag |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22819543 |
gtgattgtttccattctttattttctttgatcaagcaataaaaaaaaagtcgcgaaattcatatacattttcattaaaattgattgatcatcggtataag |
22819642 |
T |
|
| Q |
316 |
gtgtcacgaaatggttgagctagtaaagtttcatacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaatttaatgacagttagtatc |
415 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22819643 |
gtgtcacgaaatggttgagctagtaaagtttcgtacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaatttaatgacagttaatatc |
22819742 |
T |
|
| Q |
416 |
atttttaatttagttgttacccagacaagtgcacttaagactaatgggagtttctgcattttaatgtcttcacttgcagaaatatttcgacatttatctt |
515 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22819743 |
atttttaatttagttgttatccagacaattgcacttaagactaatgggagtttctgcattttaatgtcttcacttgcagaaatatttcgacatttatctt |
22819842 |
T |
|
| Q |
516 |
aacaaatgttgtctttattaatttatcaagataat--actatcatttaagt |
564 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22819843 |
aacaaatgttgtctttattaatttatcaagataatacactatcatttaagt |
22819893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 22820150 - 22820207
Alignment:
| Q |
564 |
tctacctacacaaaatgattatatcttctgattcttccaaacaccggtaactcagaaa |
621 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22820150 |
tctacctacacaaaatgattatatcttctgattcttccagacaccggtaactcagaaa |
22820207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 145 - 399
Target Start/End: Complemental strand, 26449887 - 26449635
Alignment:
| Q |
145 |
aatttattgtattattgtattttgtttttcaaataatgtacaacattttcgaatataatagactacatttggt-gattgtttccattctttattttcttt |
243 |
Q |
| |
|
|||||||| |||||| ||||| |||||| |||||||| ||||| ||||| ||||| ||| || ||||||| |||| |||||||| || ||| | | |
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| T |
26449887 |
aatttattttattatcttatttagtttttaaaataatgcacaaccttttcaaatattatatacggaatttggttgattttttccattagttctttgttat |
26449788 |
T |
|
| Q |
244 |
gatcaagcaataaaagaaaagtcgcgaaattcatatacattttcattaaaattgattgatcaacggtataaggtgtcacgaaatggttgagctagtaaag |
343 |
Q |
| |
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|| | |||| |||| || || |||||||| ||||| ||||| ||||||||||||||||| | |||||| |||||| ||||||||||||||||| |||| |
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| T |
26449787 |
gaccgagcatgaaaa-aatagccgcgaaatacatatccattt-cattaaaattgattgattatcggtatcgggtgtcgcgaaatggttgagctaggaaag |
26449690 |
T |
|
| Q |
344 |
tttcatacaatgaacaaaatttcaataaaaatagcaatgagagtgaaagacaattt |
399 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| |||| ||||||||||||||| |
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|
| T |
26449689 |
ttacatacaatgaacaaaatttcaat-aaaataataatggaagtgaaagacaattt |
26449635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 6668693 - 6668809
Alignment:
| Q |
13 |
gagatgaatgagactttgtatttttgtgtcaaacatagttatgttatct-aggttacgattatgttcgttgttcttatttattagtttttctttatgtta |
111 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| || ||| ||||| | || ||| |||| ||||| || |||| |||||| | ||||| ||||||||| |
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| T |
6668693 |
gagatgaacgagactttgtattttagtgtcaaatgtacttaagttattttagtttatgattttgttctttattctaatttatcaatttttgtttatgtta |
6668792 |
T |
|
| Q |
112 |
atacttatgtcagtttt |
128 |
Q |
| |
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| ||||||||||||||| |
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| T |
6668793 |
agacttatgtcagtttt |
6668809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 18886811 - 18886926
Alignment:
| Q |
125 |
ttttggcaatgtattcgaataattt-attgtattattgtattttgtttttcaaataatgtacaacattttcgaatataatagactaca-tttggtgattg |
222 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||| || |||||||||| |||||||| |||||||||| ||||| ||||||| || |||| | |||| |
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|
| T |
18886811 |
ttttggcaatgtatttaaatgattttattgtattaccgtgttttgttttttaaataatgcacaacattttttaatatgatagactgcattttgttaattg |
18886910 |
T |
|
| Q |
223 |
tttccattctttattt |
238 |
Q |
| |
|
||| | |||||||||| |
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|
| T |
18886911 |
ttttcgttctttattt |
18886926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 29024739 - 29024800
Alignment:
| Q |
89 |
tttattagtttttctttatgttaatacttatgtcag-ttttggcaatgtattcgaataattt |
149 |
Q |
| |
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|||||||||||||| ||| ||||| ||||||||||| ||||| |||||||||| |||||||| |
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|
| T |
29024739 |
tttattagtttttcgttacgttaagacttatgtcagcttttgacaatgtattcaaataattt |
29024800 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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