View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8407_low_3 (Length: 559)
Name: NF8407_low_3
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8407_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 9 - 544
Target Start/End: Original strand, 24178858 - 24179399
Alignment:
| Q |
9 |
ataatacttctaaaattcttacatggtatatcaaagactcaggttatacttgtta-----tatttatcaatcatatgcaaaagaaaaggtaacaacacta |
103 |
Q |
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| T |
24178858 |
ataatacttctaaaattcttacattgtatatcaaagactcaggttatacttgttaacttatatttatcaatcatatgcaaaagaaaaggtaacaacacta |
24178957 |
T |
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| Q |
104 |
cataatattaacaatacacttgtatggatattagagagatgagaaggtcagagaaacatctacaaaagtgttggagaaaacataagagcaataaagttat |
203 |
Q |
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| T |
24178958 |
cataatattaacaatacacctgtatggatattagagagatgagaaggtcagagaaacatctacaaaagtgttggagaaaacataagagcaataaagttat |
24179057 |
T |
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| Q |
204 |
gatgagaaaataaaactatagatttattcataaaatataattatttctcaacttacctatgatttaatgcaatggcacacgggaaaaatacatctcggaa |
303 |
Q |
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| T |
24179058 |
tatgagaaaataaaactatagatttattcataacatataattatttttcaacttacctatgatttaatgcaatgacacacgggaaaaatacatctcggaa |
24179157 |
T |
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| Q |
304 |
catcatcaggattcttacacttatcttgtgggcaatcagaatcataaaaacataaaacatatgctgtgatacacaataagaaag-nnnnnnncatgttat |
402 |
Q |
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| T |
24179158 |
catcatcaggattcttacatttatcttgtgggcaatcagaatcataaaaacataaaacatatgctgtgatacacaataagaaagaaaaaaaactagttat |
24179257 |
T |
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| Q |
403 |
tgaatagggattaagatttgcttcaaaggnnnnnnnnnnnnnggatgataaatggcttactttctgtgttagctacaacaaaaaataggaaaataaataa |
502 |
Q |
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| T |
24179258 |
tgaatagggattaagatttgcctcaaaggaaaaaataaaaaagaatgatagatggcttactttcggtgttggctacaacaaaaaataggaaaataaatat |
24179357 |
T |
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| Q |
503 |
gatcataacataaacaaggttaagaactttagtcatattttt |
544 |
Q |
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| T |
24179358 |
gatcataacataaacaaggttaagaactttagtcatattttt |
24179399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 544
Target Start/End: Complemental strand, 23570228 - 23570129
Alignment:
| Q |
445 |
ggatgataaatggcttactttctgtgttagctacaacaaaaaataggaaaataaataagatcataacataaacaaggttaagaactttagtcatattttt |
544 |
Q |
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| T |
23570228 |
ggatgataaaaggcttacgatcagtgtcagctacaacaagaaatatgtaaagaaatatgatcatgatataaacaagcttgagaacttcagtcatactttt |
23570129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 23570463 - 23570397
Alignment:
| Q |
204 |
gatgagaaaataaaactatagatttattcataaaatataattatttctcaacttacctatgatttaat |
271 |
Q |
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| T |
23570463 |
gatgagcaaataaaactatatatt-attcataatatagaactatttttcaacttacctatgatttaat |
23570397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 544
Target Start/End: Complemental strand, 1540439 - 1540365
Alignment:
| Q |
470 |
gttagctacaacaaaaaataggaaaataaataagatcataacataaacaaggttaagaactttagtcatattttt |
544 |
Q |
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| T |
1540439 |
gttagttacaacaaaaaataacaaaataaagaggatcatcacatgaacaaacttaataattttagtcatattttt |
1540365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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