View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8407_low_4 (Length: 523)

Name: NF8407_low_4
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8407_low_4
NF8407_low_4
[»] chr3 (4 HSPs)
chr3 (19-523)||(47986260-47986766)
chr3 (19-523)||(47995547-47996053)
chr3 (19-523)||(48004834-48005340)
chr3 (19-523)||(48014119-48014625)
[»] chr6 (19 HSPs)
chr6 (234-475)||(5096972-5097213)
chr6 (280-474)||(5397215-5397409)
chr6 (303-453)||(5354259-5354409)
chr6 (278-435)||(5128037-5128194)
chr6 (278-470)||(5370840-5371032)
chr6 (278-433)||(5157248-5157403)
chr6 (341-470)||(5073591-5073720)
chr6 (289-470)||(5066325-5066506)
chr6 (349-426)||(5284077-5284154)
chr6 (330-470)||(5177011-5177151)
chr6 (400-460)||(5257070-5257130)
chr6 (330-470)||(5278838-5278978)
chr6 (473-523)||(5157472-5157522)
chr6 (354-435)||(5137362-5137443)
chr6 (278-315)||(5434612-5434649)
chr6 (138-182)||(5097312-5097356)
chr6 (354-470)||(5102310-5102426)
chr6 (138-174)||(5350964-5351000)
chr6 (487-523)||(5426097-5426133)


Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 47986260 - 47986766
Alignment:
Q  19 acatgtgccatgtaaactgtcaataactgacggcattatttgtcagaagttcaacattattcaaatttttaagtattttacccctttagcaaattgttgt 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47986260 acatgtgccatgtaaactgtcaataactgacgacattatttgtcagaagttcaacattatttaaatttttaagtattttacccctttagcaaattgttgt 47986359  T
Q  119 gtagacttgcgtgtattgtttatagacatataaactaaagaattcaaatgtatgaggtggtacac--acaagcaggcatacaagtggagacaaagagaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  47986360 gtagacttgcgtgtattgtttatagacatataaactaaagaattcaaatgtatgaggtggtacacacacaagcaggcatacaagtggagacaaagagaat 47986459  T
Q  217 gtatgtcaacaaagaatatttgaattaagagagatttgaaggaatattttgatcctgaaactgtagaagtagtcatatttgataattgtgatgttgttgc 316  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47986460 gtatgtcaacaaagaatatttgaattaaaagagatttgaaggaatattttgatcctgaaactgtagaagtagtcatatttgataactgtgatgttgttgc 47986559  T
Q  317 aattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaaga 416  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47986560 aattgattccaaatccttaaaaactgtggcaattaatgcatccaaaatattttttgcatccagagaaagttgacattctgagttgcaatccacccaaaga 47986659  T
Q  417 cttcgaagcctttgaaggtggttagaaaaagaggatagttcatgggaactactacttggcagcaggtgcatgaaatggtgatgtgagattatttgttggt 516  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47986660 cttcgaagcctttgaaggtggttagaaaaggaggatagttcatgggaactactacttggcagcaggtgcatgaaatggtgatgtgagattatttgttggt 47986759  T
Q  517 gacatcc 523  Q
    |||||||    
T  47986760 gacatcc 47986766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 47995547 - 47996053
Alignment:
Q  19 acatgtgccatgtaaactgtcaataactgacggcattatttgtcagaagttcaacattattcaaatttttaagtattttacccctttagcaaattgttgt 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47995547 acatgtgccatgtaaactgtcaataactgacgacattatttgtcagaagttcaacattatttaaatttttaagtattttacccctttagcaaattgttgt 47995646  T
Q  119 gtagacttgcgtgtattgtttatagacatataaactaaagaattcaaatgtatgaggtggtacac--acaagcaggcatacaagtggagacaaagagaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  47995647 gtagacttgcgtgtattgtttatagacatataaactaaagaattcaaatgtatgaggtggtacacacacaagcaggcatacaagtggagacaaagagaat 47995746  T
Q  217 gtatgtcaacaaagaatatttgaattaagagagatttgaaggaatattttgatcctgaaactgtagaagtagtcatatttgataattgtgatgttgttgc 316  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47995747 gtatgtcaacaaagaatatttgaattaaaagagatttgaaggaatattttgatcctgaaactgtagaagtagtcatatttgataactgtgatgttgttgc 47995846  T
Q  317 aattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaaga 416  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47995847 aattgattccaaatccttaaaaactgtggcaattaatgcatccaaaatattttttgcatccagagaaagttgacattctgagttgcaatccacccaaaga 47995946  T
Q  417 cttcgaagcctttgaaggtggttagaaaaagaggatagttcatgggaactactacttggcagcaggtgcatgaaatggtgatgtgagattatttgttggt 516  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47995947 cttcgaagcctttgaaggtggttagaaaaggaggatagttcatgggaactactacttggcagcaggtgcatgaaatggtgatgtgagattatttgttggt 47996046  T
Q  517 gacatcc 523  Q
    |||||||    
T  47996047 gacatcc 47996053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 48004834 - 48005340
Alignment:
Q  19 acatgtgccatgtaaactgtcaataactgacggcattatttgtcagaagttcaacattattcaaatttttaagtattttacccctttagcaaattgttgt 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48004834 acatgtgccatgtaaactgtcaataactgacgacattatttgtcagaagttcaacattatttaaatttttaagtattttacccctttagcaaattgttgt 48004933  T
Q  119 gtagacttgcgtgtattgtttatagacatataaactaaagaattcaaatgtatgaggtggtacac--acaagcaggcatacaagtggagacaaagagaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  48004934 gtagacttgcgtgtattgtttatagacatataaactaaagaattcaaatgtatgaggtggtacacacacaagcaggcatacaagtggagacaaagagaat 48005033  T
Q  217 gtatgtcaacaaagaatatttgaattaagagagatttgaaggaatattttgatcctgaaactgtagaagtagtcatatttgataattgtgatgttgttgc 316  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48005034 gtatgtcaacaaagaatatttgaattaaaagagatttgaaggaatattttgatcctgaaactgtagaagtagtcatatttgataactgtgatgttgttgc 48005133  T
Q  317 aattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaaga 416  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48005134 aattgattccaaatccttaaaaactgtggcaattaatgcatccaaaatattttttgcatccagagaaagttgacattctgagttgcaatccacccaaaga 48005233  T
Q  417 cttcgaagcctttgaaggtggttagaaaaagaggatagttcatgggaactactacttggcagcaggtgcatgaaatggtgatgtgagattatttgttggt 516  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48005234 cttcgaagcctttgaaggtggttagaaaaggaggatagttcatgggaactactacttggcagcaggtgcatgaaatggtgatgtgagattatttgttggt 48005333  T
Q  517 gacatcc 523  Q
    |||||||    
T  48005334 gacatcc 48005340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 48014119 - 48014625
Alignment:
Q  19 acatgtgccatgtaaactgtcaataactgacggcattatttgtcagaagttcaacattattcaaatttttaagtattttacccctttagcaaattgttgt 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48014119 acatgtgccatgtaaactgtcaataactgacgacattatttgtcagaagttcaacattatttaaatttttaagtattttacccctttagcaaattgttgt 48014218  T
Q  119 gtagacttgcgtgtattgtttatagacatataaactaaagaattcaaatgtatgaggtggtacac--acaagcaggcatacaagtggagacaaagagaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  48014219 gtagacttgcgtgtattgtttatagacatataaactaaagaattcaaatgtatgaggtggtacacacacaagcaggcatacaagtggagacaaagagaat 48014318  T
Q  217 gtatgtcaacaaagaatatttgaattaagagagatttgaaggaatattttgatcctgaaactgtagaagtagtcatatttgataattgtgatgttgttgc 316  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48014319 gtatgtcaacaaagaatatttgaattaaaagagatttgaaggaatattttgatcctgaaactgtagaagtagtcatatttgataactgtgatgttgttgc 48014418  T
Q  317 aattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaaga 416  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48014419 aattgattccaaatccttaaaaactgtggcaattaatgcatccaaaatattttttgcatccagagaaagttgacattctgagttgcaatccacccaaaga 48014518  T
Q  417 cttcgaagcctttgaaggtggttagaaaaagaggatagttcatgggaactactacttggcagcaggtgcatgaaatggtgatgtgagattatttgttggt 516  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48014519 cttcgaagcctttgaaggtggttagaaaaggaggatagttcatgggaactactacttggcagcaggtgcatgaaatggtgatgtgagattatttgttggt 48014618  T
Q  517 gacatcc 523  Q
    |||||||    
T  48014619 gacatcc 48014625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 475
Target Start/End: Complemental strand, 5097213 - 5096972
Alignment:
Q  234 atttgaattaagagagatttgaaggaatattttgatcctgaaactgtagaagtagtcatatttgataattgtgatgttgttgcaattgattccaaatcct 333  Q
    ||||||||||| ||||| |||||||||| || |||| ||     |||||||||||||||||||||||  ||||||||  ||||||||||||| ||  |||    
T  5097213 atttgaattaaaagagacttgaaggaatgttctgatacttgtgatgtagaagtagtcatatttgatacctgtgatgtaattgcaattgattcaaacccct 5097114  T
Q  334 taaaaactgtggcaaataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaagacttcgaagcctttgaag 433  Q
    || || |||||||| |||| |||||||||||  ||   |||||  ||||| |||||  ||||||| |||| |||||||||||||||||||| ||| ||||    
T  5097113 tataatctgtggcatataaggcatccaaaattattgcagcatcatgagaaagttgaagttctgagctgcactccacccaaagacttcgaagacttggaag 5097014  T
Q  434 gtggttagaaaaagaggatagttcatgggaactactacttgg 475  Q
    ||  || ||||  ||  |||||||||||||||||||| ||||    
T  5097013 gtacttggaaatcgataatagttcatgggaactactatttgg 5096972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 280 - 474
Target Start/End: Complemental strand, 5397409 - 5397215
Alignment:
Q  280 tagaagtagtcatatttgataattgtgatgttgttgcaattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatccag 379  Q
    |||||||||||||||| |||  ||||||||| |||  | |||||||||| || ||| ||  ||| ||| |||  |||||||||||  |||||||||| ||    
T  5397409 tagaagtagtcatattggattcttgtgatgtagttttagttgattccaattctttagaatttgtagcacatagagcatccaaaattatttttgcatcaag 5397310  T
Q  380 agaaggttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggtggttagaaaaagaggatagttcatgggaactactacttg 474  Q
    |||| |||||  ||| || ||||||||||| |||||||||||||||||| |||| || || |||||||| |||||||| || |||||||||||||    
T  5397309 agaaagttgatcttcagaattgcaatccacgcaaagacttcgaagccttggaagttgtttcgaaaaagatgatagttcgtgcgaactactacttg 5397215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 453
Target Start/End: Original strand, 5354259 - 5354409
Alignment:
Q  303 tgtgatgttgttgcaattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgc 402  Q
    |||||||| |||||| ||||||| || |||||| |||| |||||| |||  |||| ||||||  |||||||||| |||||| |||||  | | || ||||    
T  5354259 tgtgatgtagttgcagttgattcaaattccttagaaacagtggcatatagggcattcaaaattgtttttgcatctagagaaagttgatctacggaattgc 5354358  T
Q  403 aatccacccaaagacttcgaagcctttgaaggtggttagaaaaagaggata 453  Q
    ||||||||| |||||||||||| ||| ||||||||| ||||||||| ||||    
T  5354359 aatccacccgaagacttcgaagtcttggaaggtggtcagaaaaagatgata 5354409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 435
Target Start/End: Original strand, 5128037 - 5128194
Alignment:
Q  278 tgtagaagtagtcatatttgataattgtgatgttgttgcaattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatcc 377  Q
    |||||||||||||||| |||||| |||||||||  ||||| ||  |||||| |||||| ||  ||||||| | || |||||||||||  ||  ||||||     
T  5128037 tgtagaagtagtcataattgatacttgtgatgtacttgcagtttgttccaactccttataatttgtggcatacaaggcatccaaaattattgctgcatca 5128136  T
Q  378 agagaaggttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggt 435  Q
     ||||| |||||  ||||||| |||| |||| ||||||||||||||| ||| ||||||    
T  5128137 tgagaaagttgaagttctgagctgcactccatccaaagacttcgaagacttggaaggt 5128194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 470
Target Start/End: Complemental strand, 5371032 - 5370840
Alignment:
Q  278 tgtagaagtagtcatatttgataattgtgatgttgttgcaattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatcc 377  Q
    ||||||||||||| ||||||||| |||||||||  ||||| ||| |||||  |||||| || || | ||| ||||  ||||||||||  ||  ||||||     
T  5371032 tgtagaagtagtcttatttgatacttgtgatgtaattgcagttggttccatctccttataatctatcgcatataagacatccaaaattgttgctgcatca 5370933  T
Q  378 agagaaggttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggtggttagaaaaagaggatagttcatgggaactacta 470  Q
     ||||| |||||  ||| ||| | || ||||||||||||||||||||  || ||||||  ||  |||  || |||||||||||||||||||||    
T  5370932 tgagaaagttgaagttccgagctacattccacccaaagacttcgaagaattggaaggtacttgaaaattgatgatagttcatgggaactacta 5370840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 433
Target Start/End: Original strand, 5157248 - 5157403
Alignment:
Q  278 tgtagaagtagtcatatttgataattgtgatgttgttgcaattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatcc 377  Q
    |||||||||||||| |||||||||||||||||| | || | ||| |||||||| |||| ||  ||||||| | |  |||||||||||  ||  ||||||     
T  5157248 tgtagaagtagtcacatttgataattgtgatgtagctgtagttggttccaaattcttagaatttgtggcatacagggcatccaaaattattgctgcatca 5157347  T
Q  378 agagaaggttgacattctgagttgcaatccacccaaagacttcgaagcctttgaag 433  Q
     ||||| |||||  ||| ||| |||| |||||||| ||||||||||| ||| ||||    
T  5157348 tgagaaagttgaagttccgagctgcactccacccatagacttcgaagacttggaag 5157403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 470
Target Start/End: Original strand, 5073591 - 5073720
Alignment:
Q  341 tgtggcaaataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggtggtta 440  Q
    ||||||| |||| |||||||||||  ||| ||||||  ||||| |||||  || |||   ||| ||||||||||||| |||||||| | ||||||  ||     
T  5073591 tgtggcatataaggcatccaaaattctttctgcatcttgagaaagttgaagttttgatccgcattccacccaaagacatcgaagccatggaaggtaattg 5073690  T
Q  441 gaaaaagaggatagttcatgggaactacta 470  Q
    |||| ||| |||||||||||||||||||||    
T  5073691 gaaatagatgatagttcatgggaactacta 5073720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 289 - 470
Target Start/End: Original strand, 5066325 - 5066506
Alignment:
Q  289 tcatatttgataattgtgatgttgttgcaattgattccaaatccttaaaaactgtggcaaataatgcatccaaaatattttttgcatccagagaaggttg 388  Q
    |||||||||||| |||||| || | || | | ||||||| ||||||| |||  || ||  |||| |||||||| ||  || |||||||   |||| ||||    
T  5066325 tcatatttgatatttgtgaagtagctgaagtcgattccacatccttagaaagagtagcgtataaagcatccaatattattgttgcatcattagaaagttg 5066424  T
Q  389 acattctgagttgcaatccacccaaagacttcgaagcctttgaaggtggttagaaaaagaggatagttcatgggaactacta 470  Q
    |  ||||||  |||| |||||||||||||||||||| ||| ||||||  || ||||  || |||||||||||||| ||||||    
T  5066425 atgttctgaactgcactccacccaaagacttcgaagacttggaaggtacttggaaattgatgatagttcatgggagctacta 5066506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 5284077 - 5284154
Alignment:
Q  349 ataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaagacttcgaagcc 426  Q
    |||| |||||||||||  || ||| ||| |||||| |||||  ||| |||||||||||||||||||||||| ||||||    
T  5284077 ataaagcatccaaaatcattgttgaatcaagagaaagttgatcttcggagttgcaatccacccaaagactttgaagcc 5284154  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 470
Target Start/End: Complemental strand, 5177151 - 5177011
Alignment:
Q  330 tccttaaaaactgtggcaaataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaagacttcgaagccttt 429  Q
    |||||| ||| ||||||| |||| |||||||||||  |||||||||| | |||| |||||  ||||||    || || ||||| |||||||||||||||     
T  5177151 tccttagaaattgtggcatataaagcatccaaaatgatttttgcatctacagaaagttgaagttctgaaccacactctacccatagacttcgaagccttg 5177052  T
Q  430 gaaggtggttagaaaaagaggatagttcatgggaactacta 470  Q
     ||||||||  |||| ||| || ||||| || |||||||||    
T  5177051 aaaggtggtcggaaatagatgacagttcctgagaactacta 5177011  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 5257070 - 5257130
Alignment:
Q  400 tgcaatccacccaaagacttcgaagcctttgaaggtggttagaaaaagaggatagttcatg 460  Q
    ||||||||||||||||||||  ||||||| |||| ||||| |||||||| || ||||||||    
T  5257070 tgcaatccacccaaagacttttaagccttggaagttggttcgaaaaagatgaaagttcatg 5257130  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 470
Target Start/End: Complemental strand, 5278978 - 5278838
Alignment:
Q  330 tccttaaaaactgtggcaaataatgcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaagacttcgaagccttt 429  Q
    |||||| ||| ||||||| |||| |||||||||||  |||||||||| | |||| |||||  ||||||    || || ||||| |||||||||||||||     
T  5278978 tccttagaaattgtggcatataaagcatccaaaatgatttttgcatctacagaaagttgaagttctgaaccacactctacccatagacttcgaagccttg 5278879  T
Q  430 gaaggtggttagaaaaagaggatagttcatgggaactacta 470  Q
     ||||||||  |||| ||| || ||||| || |||||||||    
T  5278878 aaaggtggtcggaaatagatgacagttcctgagaactacta 5278838  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 5157472 - 5157522
Alignment:
Q  473 tggcagcaggtgcatgaaatggtgatgtgagattatttgttggtgacatcc 523  Q
    ||||||||| ||  |||||||| |||| |||||||||||||||||||||||    
T  5157472 tggcagcagatgtttgaaatggagatgggagattatttgttggtgacatcc 5157522  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 435
Target Start/End: Original strand, 5137362 - 5137443
Alignment:
Q  354 gcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggt 435  Q
    |||||||||||  ||  ||||||  ||||| |||||| ||||||  |||| |||||||||||||||||||| ||| ||||||    
T  5137362 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggt 5137443  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 5434649 - 5434612
Alignment:
Q  278 tgtagaagtagtcatatttgataattgtgatgttgttg 315  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  5434649 tgtagaagtagtcatatttgatacttgtgatgtagttg 5434612  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 5097356 - 5097312
Alignment:
Q  138 ttatagacatataaactaaagaattcaaatgtatgaggtggtaca 182  Q
    ||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  5097356 ttatagacatatacacttaagaattcaaatgcatgaggtgataca 5097312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 470
Target Start/End: Original strand, 5102310 - 5102426
Alignment:
Q  354 gcatccaaaatattttttgcatccagagaaggttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggtggttagaaaaagaggata 453  Q
    |||||||||||  ||  ||||||  ||||| |||||| ||||||  |||| ||||||||||||||||||||  || ||||||   | ||||  || ||||    
T  5102310 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagatttggaaggtacatggaaatcgatgata 5102409  T
Q  454 gttcatgggaactacta 470  Q
    |||| ||||||||||||    
T  5102410 gttcgtgggaactacta 5102426  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 5351000 - 5350964
Alignment:
Q  138 ttatagacatataaactaaagaattcaaatgtatgag 174  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  5351000 ttatagacttataaactaaagaattcaaatgtttgag 5350964  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 487 - 523
Target Start/End: Complemental strand, 5426133 - 5426097
Alignment:
Q  487 tgaaatggtgatgtgagattatttgttggtgacatcc 523  Q
    |||||||| |||| |||||||||||||||||||||||    
T  5426133 tgaaatggggatgggagattatttgttggtgacatcc 5426097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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