View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8407_low_6 (Length: 417)
Name: NF8407_low_6
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8407_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 70 - 397
Target Start/End: Original strand, 18203726 - 18204053
Alignment:
| Q |
70 |
gggatagatgggacgacatgatgatattaatattgtttttgtttggttataaaattaaattttatggagctatggttgcttgaagtgtaagtgtttgcag |
169 |
Q |
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| T |
18203726 |
gggatagatgggacgacatgatgatattaatattgtatttatttggttataaaattaaattttatggagctatggttgcttgaagtgtaagtgtttgcag |
18203825 |
T |
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| Q |
170 |
gaacgtacagtactaatgtgccttcttctgagcagcacataccaccctggcggtccaatttctgtaaacatatatctattatctaccattcgtacatcac |
269 |
Q |
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| T |
18203826 |
gaacgtacagtactaatgtgccttcttctgagcagcacataccaccctggcggtccaattcctgtaaacatatatctattatctaccattcgtacatcac |
18203925 |
T |
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| Q |
270 |
cttcttactcattcacgttgttgagattcatggttcaaattatctcttacgtcttaaatattcaaaagaatgactattactttttgttgggtcacaaagt |
369 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18203926 |
cttcttactcattcacgttgttgagattcatggttctaattatctcttacgtcttaaatattcaaaagaatgactattactttttgttgggtcacaaagt |
18204025 |
T |
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| Q |
370 |
gaggctagaggaccacctacgatacgat |
397 |
Q |
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| T |
18204026 |
gagtctagaggaccacctactatacgat |
18204053 |
T |
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