View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8407_low_9 (Length: 388)
Name: NF8407_low_9
Description: NF8407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8407_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 31706979 - 31706609
Alignment:
| Q |
1 |
ggtccttccttgatatatgcagctctaaggggggcagcaacattgaaagcaagagcattgaaagagatgtggaatattagtactgcagtgacaccacttg |
100 |
Q |
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| T |
31706979 |
ggtccttccttgatatatgcagctctaaggggggcagcaacattgaaagcaagagcattgaaagagatgtggaatattagtactgcagtgacaccacttg |
31706880 |
T |
|
| Q |
101 |
agaaaagcataggaattggaatatgtggtggtaaaggtaataacaacagtagttctagcactagtgaaagtggaggagaggttatcaatgcagataattt |
200 |
Q |
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| T |
31706879 |
agaaaagcataggaattggaatatgtggtggtaaaggtaataacaacagtagttctagcactagtgaaagtggaggagaggttatcaatgcagataattt |
31706780 |
T |
|
| Q |
201 |
tctaagtacttgcagccaagaacttcttgctagaggaactgaattactcaaacgaactcgcaaaggtaattttaataaatcgagttttgagacactaata |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31706779 |
tctgagtacttgcagccaagaacttcttgctagaggaactgaattactcaaacgaactcgcaaaggtaattttaataaatcgagttttgagacactaata |
31706680 |
T |
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| Q |
301 |
cttgttttcatttgcaaaattgcaaaatgattaaactatatttggtgattgatatttgtaggtgatcttca |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
31706679 |
cttgttttcatttgcaaaattgcaaaatgattaaactatatttggtgattgatgtatgtaggtgatcttca |
31706609 |
T |
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