View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8408_high_2 (Length: 527)
Name: NF8408_high_2
Description: NF8408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8408_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 53 - 509
Target Start/End: Original strand, 24048934 - 24049390
Alignment:
| Q |
53 |
ggacagattcatcaacgtgttccactgtacattgggagcacagaggaagtggagaaggttgaaaagtacttagcttaaaagatatgttaatgcnnnnnnn |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24048934 |
ggacagattcatcaacgtgttccactgtacattgggagcacagaggaagtggagaaggttgaaaagtacttagcttaaaagatatgttaatgcaaaaaaa |
24049033 |
T |
|
| Q |
153 |
gttattttgtagcttatgttctatgaaacttgttacagtcaagtgattttaaggaagaattctttttgtattctttctcccttttcatttctctattgca |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24049034 |
gttattttgtagcttatgttctatgaaacttgttacagtcaagtgattttaaggaagaattctttttgtattctttctcccttttcatttctctattgca |
24049133 |
T |
|
| Q |
253 |
aaagaaaagcaagnnnnnnnnnntatttctcttaagactattttgtataaaaatttaaaataatcatgatttttgtagcacacttacatagcc-tcctta |
351 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
24049134 |
aaagaaaagcaag-aaaaaaaaatatttctcttaacactattttgtataaaaatttaaaataatcatgatttttgtagcacacttacctagccttcctta |
24049232 |
T |
|
| Q |
352 |
aatcacatttcctcaatgtaagtaaagtatgcatcaaggtcttaaccactaaggtgttgtttcctannnnnnnnnnnnnnnnnaatcaaattctcagtat |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24049233 |
aatcacatttcctcaatgtaagtaaagtatgcatcaaggtcttaaccactaaggtgttgtttcctattttattttatttttataatcaaattctcagtat |
24049332 |
T |
|
| Q |
452 |
atatacatcaagatttaagacattttacaagtttaaaggatgaaattctggcacgtta |
509 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
24049333 |
atatacatcaagatttaagacatttgataagtttaaaggatgaaattctcgcacgtta |
24049390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24048881 - 24048915
Alignment:
| Q |
1 |
ttatgataaatgttatgatggattctcttattcaa |
35 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24048881 |
ttatgataaatgttatgatggatactcttattcaa |
24048915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University