View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8408_high_3 (Length: 415)
Name: NF8408_high_3
Description: NF8408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8408_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 45676754 - 45676378
Alignment:
| Q |
17 |
atgaatcatggccgtcnnnnnnntgatgtgtcacctttggtaggtaggacccaaagtagtattatgtggaatgtctcgtgaattagaaagtcagatatat |
116 |
Q |
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| T |
45676754 |
atgaatcatggccgtcaaaaaaatgatgtgtcacctttggtaggtaggacccaaagtagtattatgtggaatgtctcgtgaattagaaagtcagatatat |
45676655 |
T |
|
| Q |
117 |
aaattcaaaatgacaatgtccaatcataactttttcttcctctccaaagtttccttcttctatttatttcactttctatatatcaacttgccattttatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45676654 |
aaattcaaaatgacaatgtccaatcataactttttcttcctctccaaagtttccttcttctatttatttcactttctatatatcaacttgccattttatt |
45676555 |
T |
|
| Q |
217 |
tctcaaaacctttttaacttctaagttctaacccttcttcactactataataattcatataacaaagttcctatgctagctagtagctaactcttcctcc |
316 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45676554 |
tctcaaaacatttttaacttctaagttctaacccttcttcactactataataattcatataacaaagttcctatgcta-------gctaactcttcctcc |
45676462 |
T |
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| Q |
317 |
agaatatttccacgttggttctgacacaaagagttt-nnnnnnnncatttgaaagaggttaattgaagaaagtgcacatgggaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
45676461 |
agaatatttccacgttggttctgacacaaagagtttaaaaaaaaacatttgatagaggttaattgaagaaagtgcacatgggaa |
45676378 |
T |
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