View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8408_low_4 (Length: 407)
Name: NF8408_low_4
Description: NF8408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8408_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 4781543 - 4781924
Alignment:
| Q |
18 |
aaaaggagtcgtatctgatattaaggatcaaaagaattgtggtaagtttcatcgttgtctgcacgnnnnnnnnnn-cttactttaaccacattactttaa |
116 |
Q |
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| T |
4781543 |
aaaaggagtcgtatctgatattaaggatcaaaagaattgtggtaagtttcatcgttgtctgcacgaaaaaaaaaatcttactttaaccacattactttaa |
4781642 |
T |
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| Q |
117 |
ccacattgcatttgtttttgttagggagttgctgggcattctcagctgtaggtgccattgaaggaataaatgcaataacaacagggaagcttatcaacct |
216 |
Q |
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| T |
4781643 |
ccacattgcatttgtttttgttagggagttgctgggcattctcagctgtaggtgccattgaaggaataaatgcaataacaacagggaagcttatcaacct |
4781742 |
T |
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| Q |
217 |
ttcagagcaagagcttttggattgtgaccctataagtgggggttgcaatagtggatgggtcaacaaagcatttgattgggttataagaaacaaaggagtt |
316 |
Q |
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| T |
4781743 |
ttcagagcaagagcttttggattgtgaccctataagtgggggttgcaatagtggatgggtcaacaaagcatttgattgggttataagaaacaaaggagtt |
4781842 |
T |
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| Q |
317 |
gcattggaaaatgattatccatatagggcagagaagggtgtttgcaaagcctcacaggtccttaatttctatcaagtattat |
398 |
Q |
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| T |
4781843 |
gcattggataatgattatccatatacggcagagaagggtgtttgcaaagcctcacaggtccttaatttctatcaaatattat |
4781924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 116 - 383
Target Start/End: Original strand, 4785540 - 4785801
Alignment:
| Q |
116 |
accacattgcatttgtttttgttagggagttgctgggcattctcagctgtaggtgccattgaaggaataaatgcaataacaacagggaagcttatcaacc |
215 |
Q |
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| T |
4785540 |
accacattgcatttgtttttgttaggttcttgctggatattcacagctgtaggcgccattgaaggaataaatgcaataaaaacagggaagcttattagtc |
4785639 |
T |
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| Q |
216 |
tttcagagcaagagcttttggattgtgaccctataagtgggggttgcaatagtggatgggtcaacaaagcatttgattgggttataagaaacaaaggagt |
315 |
Q |
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| T |
4785640 |
tttcagcgcaagaacttttggattgcaaccc------tgcagcatgcaacactggatttgtgaacaatgcattcaattgggttataagaaatggaggact |
4785733 |
T |
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| Q |
316 |
tgcattggaaaatgattatccatatagggcagagaagggtgtttgcaaagcctcacaggtccttaatt |
383 |
Q |
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| T |
4785734 |
tgcatcggattatgattatgcttatacggcaaaaaagggtttttgcagagcctcacaggttcttaatt |
4785801 |
T |
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