View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8408_low_6 (Length: 344)
Name: NF8408_low_6
Description: NF8408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8408_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 11017872 - 11017540
Alignment:
| Q |
11 |
cacagacatggacacatgacacgaacacgttgacactaataaaattttaagaaaataatctaattcaatgtaataaaaaatgtcggtgtcgtgtctgtgt |
110 |
Q |
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| T |
11017872 |
cacagacatggacacatgacacgaacacgttgacaccaataaaattttaagaaaataatctaattcaatgtaataaaaaatgtcggtgtcgtgtctgtgt |
11017773 |
T |
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| Q |
111 |
ttgatcca---catgtcacttcaatcagaagtgtcggtgcaacaaaccatacgacacttgatttatcttgtttaaaaatatggttaattcagttgagtaa |
207 |
Q |
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| T |
11017772 |
ttgatccaacacatgtcacttcaatcagaagtgtcggtgcaacaaaggatacgacacttggtttatcttgtttaaaaatatggttaattcagttgaataa |
11017673 |
T |
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| Q |
208 |
acgattgtttacttcaattagtgtcaaaattatagtgaattcaatcacatgattaaccattcacaattttcaacatgatcaaaattaaagatatagacag |
307 |
Q |
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| T |
11017672 |
atgattgcttacttcaattagtgtcaaaattatagtgaattcaatcacatgattaaccattcacaattttcaacataatcaaaattaaagatatagacag |
11017573 |
T |
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| Q |
308 |
ttgaatcagccataattttgcatgtgattaacc |
340 |
Q |
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| T |
11017572 |
ttgaatcagccataattttgcatgtgattaacc |
11017540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 20727205 - 20727132
Alignment:
| Q |
267 |
ttcacaattttcaacatgatcaaaattaaagatatagacagttgaatcagccataattttgcatgtgattaacc |
340 |
Q |
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| T |
20727205 |
ttcacaattttcaacgtgatctaaattaaccatatactcaagtgaattaaccacaattttgcatgtgattaacc |
20727132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 19369805 - 19369880
Alignment:
| Q |
30 |
cacgaacacgttgacactaataaaattttaagaaaataatctaattcaatgtaataaaaaatgtcggtgtcgtgtc |
105 |
Q |
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| T |
19369805 |
cacggacacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgtc |
19369880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 10031552 - 10031612
Alignment:
| Q |
24 |
acatgacacgaacacgttgacactaataaaattttaagaaaataatctaattcaatgtaat |
84 |
Q |
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| T |
10031552 |
acatgacacaaacacgttgacaccgataaaattttgagaaaatgacataattcaatgtaat |
10031612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 34197117 - 34197173
Alignment:
| Q |
48 |
aataaaattttaagaaaataatctaattcaatgtaataaaaaatgtcggtgtcgtgt |
104 |
Q |
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| T |
34197117 |
aataaaattttaagaaagtgatataattcagtgtaattataagtgtcggtgtcgtgt |
34197173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 44317353 - 44317303
Alignment:
| Q |
34 |
aacacgttgacactaataaaattttaagaaaataatctaattcaatgtaat |
84 |
Q |
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| T |
44317353 |
aacacgttgacactgataaaattttaaaaaaatgacataattcaatgtaat |
44317303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 5376545 - 5376496
Alignment:
| Q |
56 |
tttaagaaaataatctaattcaatgtaataaaaaatgtcggtgtcgtgtc |
105 |
Q |
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| T |
5376545 |
tttaagaaaataacataattcagtgtaattaaaagtgtcggtgtcgtgtc |
5376496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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