View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8409_high_17 (Length: 225)
Name: NF8409_high_17
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 29987330 - 29987505
Alignment:
| Q |
34 |
cccataattctcttacggttgcaaattgaaatcacagctaactaagagtgcatataatatgtcatacttaccaattgtgaacaaatcactatagaggata |
133 |
Q |
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| T |
29987330 |
cccataattctcttacggttgcaaattgaaatcacagctaactaagagtgcatataatatgtcatacttaccaattgtgaacaaatcactatagaggata |
29987429 |
T |
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| Q |
134 |
gagttccgagctttattttaatttttatgtgtatgttaaatgcatcgtattctatatttttcaatgattgatgtcc |
209 |
Q |
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| T |
29987430 |
gagttccgagctttattttaatttttatgtgtatgttaaatgcatcgtattctatatttttcaatgattgatgtcc |
29987505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 29996956 - 29997060
Alignment:
| Q |
35 |
ccataattctcttacggttgcaaattgaaatcacagctaactaagagtgcatataatatgtcatacttaccaattgtgaacaaatcactatagaggatag |
134 |
Q |
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| T |
29996956 |
ccataattattttacggttgcaaattgaaatcacagctaactaagagtgcatgtaatatgccaaacttaccaattctaaacaaacaactatagaggatag |
29997055 |
T |
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| Q |
135 |
agttc |
139 |
Q |
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| T |
29997056 |
agttc |
29997060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 29988055 - 29988131
Alignment:
| Q |
62 |
aaatcacagctaactaagagtgcatataatatgtcatacttaccaattgtgaacaaatcactatagaggatagagtt |
138 |
Q |
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| T |
29988055 |
aaatcaaaactaactaatagtgcatataatatgccacacttacaaattatgaacaaaccactataaaggatagagtt |
29988131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 29988691 - 29988731
Alignment:
| Q |
160 |
atgtgtatgttaaatgcatcgtattctatatttttcaatga |
200 |
Q |
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| T |
29988691 |
atgtgtatgttaaatgtatcgtatcctatatttttcaatga |
29988731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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