View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8409_high_2 (Length: 486)
Name: NF8409_high_2
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Complemental strand, 33928407 - 33927948
Alignment:
| Q |
20 |
agaagtttagatgttagcaacaatcatacttcatctcttaagattaatactcaaaattctcaccaatcttcttcttcaacctatgcttcaagcactgaga |
119 |
Q |
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| T |
33928407 |
agaagtttagatgttagcaacaatcatacttcatctcttaagattaatactcaaaattctcatcaatcttcttcttcaacctatgcttcaagcactgaga |
33928308 |
T |
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| Q |
120 |
atatttcaaggctcttagaaggttggatgagatcttcaccaaattcacaaatcaaaggaaattatcaatatggtcatcaagagtttcaaagcattaatga |
219 |
Q |
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| T |
33928307 |
atatttcaaggctcttggaaggttggatgagatcttcaccaaattcacaaatcaaaggaaattatcaatatggtcatcaagagtttcaaagcattaatga |
33928208 |
T |
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| Q |
220 |
tgatattattgatgataa---taatgaatttgaaaataatgggaaattattagtgaagtctgcttcagttccagctgatttaaaccttgaaatc------ |
310 |
Q |
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| T |
33928207 |
tgatattattgatgataataataatgactttgaaaataatgggaaattattagtgaagtctgcttcagttccagctgatttaaaccttgaaatccatcat |
33928108 |
T |
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| Q |
311 |
---catcatcatcacaaaattaccagcaaaggtgaattattacaagatggtggagtttcacatgatcaagagtttgattctattctttcatttgagaatc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33928107 |
catcatcatcatcacaaaattaccagcaaaggtgaattattacaagatggtggagtttcacatgatcaagagtttgattctattctttcatttgagaatc |
33928008 |
T |
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| Q |
408 |
ttaacaatggtgctgcttgggacaagtcaacttgtgattctatgcctgaaaagtgttcag |
467 |
Q |
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| T |
33928007 |
ttaacaatggtgctgcttgggacaagtcaacttgtgattctatgcctgaaaagtgttcag |
33927948 |
T |
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