View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8409_high_5 (Length: 365)

Name: NF8409_high_5
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8409_high_5
NF8409_high_5
[»] chr4 (6 HSPs)
chr4 (234-352)||(45569656-45569774)
chr4 (37-234)||(45094818-45095018)
chr4 (128-237)||(44668012-44668121)
chr4 (113-237)||(44687338-44687462)
chr4 (146-203)||(44642503-44642560)
chr4 (253-320)||(45175587-45175653)
[»] chr7 (3 HSPs)
chr7 (113-234)||(9798218-9798334)
chr7 (28-76)||(9798398-9798446)
chr7 (253-320)||(9798150-9798216)
[»] chr5 (1 HSPs)
chr5 (160-206)||(8831350-8831396)
[»] chr1 (2 HSPs)
chr1 (159-206)||(19566378-19566425)
chr1 (159-204)||(23684849-23684894)
[»] chr8 (1 HSPs)
chr8 (29-75)||(42694841-42694887)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 45569774 - 45569656
Alignment:
Q  234 agatagtgtgaagtccactggcttctgctttttatgtaatagttcgctgcataaattacttgctggtagtaggatgtggaaatttgggagcaatcaatga 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45569774 agatagtgtgaagtccactggcttctgctttttatgtaatagttcgctgcataaattacttgctggtagtaggatgtggaaatttgggagcaatcaatga 45569675  T
Q  334 tagcaaaggtgttgatgtc 352  Q
    |||||||||||||| ||||    
T  45569674 tagcaaaggtgttgttgtc 45569656  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 45095018 - 45094818
Alignment:
Q  37 tttgcatttacacttgcaagagtaatttgtctgtctatgtgtatgcttaacaacatatgcatgcctttatcattacaatt--------atcaaaatcgca 128  Q
    ||||||| ||||||||||||||||||||||||||     || | |||||| ||  ||||||||| ||| |||| ||||||        ||||| ||| ||    
T  45095018 tttgcatctacacttgcaagagtaatttgtctgt-----tgcaggcttaataatctatgcatgcatttttcatgacaatttcaaatttatcaacatctca 45094924  T
Q  129 atcaattggttagataaattaagtatttctgcaacaatgtagcttagttaataatgagatgctaggtagtagatttgcaatgatcctgtcactgaagaac 228  Q
    || |||| |||||| |||||||||  |||| ||||||||  | | |||||||||||||||| ||||||||||||||||  ||||||||  ||||||||||    
T  45094923 attaatttgttagaaaaattaagtccttcttcaacaatgcggataagttaataatgagatggtaggtagtagatttgctttgatcctgcaactgaagaac 45094824  T
Q  229 aactta 234  Q
    ||||||    
T  45094823 aactta 45094818  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 44668121 - 44668012
Alignment:
Q  128 aatcaattggttagataaattaagtatttctgcaacaatgtagcttagttaataatgagatgctaggtagtagatttgcaatgatcctgtcactgaagaa 227  Q
    ||||||||  ||||| ||| ||||| ||||| |||||||   ||| |||||||||||||||||||||| ||||||||||  |||| |||  |||||||||    
T  44668121 aatcaatttattagaaaaactaagtctttcttcaacaatacggctaagttaataatgagatgctaggtggtagatttgctttgattctgcaactgaagaa 44668022  T
Q  228 caacttagat 237  Q
    ||||||||||    
T  44668021 caacttagat 44668012  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 44687462 - 44687338
Alignment:
Q  113 aattatcaaaatcgcaatcaattggttagataaattaagtatttctgcaacaatgtagcttagttaataatgagatgctaggtagtagatttgcaatgat 212  Q
    ||||||| | ||| |||||||||   |||| ||| ||||| ||||| |||||||   ||| |||||||||||||||||||||| ||||||||||  ||||    
T  44687462 aattatctacatctcaatcaatttaatagaaaaactaagtctttcttcaacaatacggctaagttaataatgagatgctaggtggtagatttgctttgat 44687363  T
Q  213 cctgtcactgaagaacaacttagat 237  Q
     |||  |||||||||| ||||||||    
T  44687362 tctgcaactgaagaacgacttagat 44687338  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 44642560 - 44642503
Alignment:
Q  146 attaagtatttctgcaacaatgtagcttagttaataatgagatgctaggtagtagatt 203  Q
    ||||||| ||||| |||||||  |||| |||||||||||||||||||||| |||||||    
T  44642560 attaagtctttcttcaacaatacagctaagttaataatgagatgctaggtggtagatt 44642503  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 45175587 - 45175653
Alignment:
Q  253 ggcttctgctttttatgtaatagttcgctgcataaattacttgctggtagtaggatgtggaaatttgg 320  Q
    |||| ||||||||| |||||||| ||||||||| |||||||||| |||||| || | |||||||||||    
T  45175587 ggctgctgctttttgtgtaatagatcgctgcat-aattacttgcgggtagttgggtttggaaatttgg 45175653  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 9798334 - 9798218
Alignment:
Q  113 aattatcaaaatcgcaatcaattggttagataaattaagtatttctgcaacaatgtagcttagttaataatgagatgctaggtagtagatttgcaatgat 212  Q
    ||||||||||||| ||||||||| || ||| ||||||||| ||||| ||| ||||||||| |||||| ||||| ||    | ||||||||||||  ||||    
T  9798334 aattatcaaaatcacaatcaatt-gtgagaaaaattaagtctttctccaagaatgtagctaagttaacaatgatat----gttagtagatttgctttgat 9798240  T
Q  213 cctgtcactgaagaacaactta 234  Q
    ||||| | ||||||||||||||    
T  9798239 cctgtaattgaagaacaactta 9798218  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 9798446 - 9798398
Alignment:
Q  28 cactcactatttgcatttacacttgcaagagtaatttgtctgtctatgt 76  Q
    |||||||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  9798446 cactcactattttcatctacacttgcaagattaatttgtctgtccatgt 9798398  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 9798216 - 9798150
Alignment:
Q  253 ggcttctgctttttatgtaatagttcgctgcataaattacttgctggtagtaggatgtggaaatttgg 320  Q
    |||| ||||||||| |||||||| ||||||||| |||||||||| |||||| || | |||||||||||    
T  9798216 ggctgctgctttttgtgtaatagatcgctgcat-aattacttgcgggtagttgggtttggaaatttgg 9798150  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 8831396 - 8831350
Alignment:
Q  160 caacaatgtagcttagttaataatgagatgctaggtagtagatttgc 206  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  8831396 caacaatgtagctaagttaataatgagatgctaggcagtagatttgc 8831350  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 19566425 - 19566378
Alignment:
Q  159 gcaacaatgtagcttagttaataatgagatgctaggtagtagatttgc 206  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  19566425 gcaacaatgtagctaagttaataatgagatactaggtggtagatttgc 19566378  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 23684849 - 23684894
Alignment:
Q  159 gcaacaatgtagcttagttaataatgagatgctaggtagtagattt 204  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||    
T  23684849 gcaacaatgtagctaagttaataatgagatgctaggaggtagattt 23684894  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 42694841 - 42694887
Alignment:
Q  29 actcactatttgcatttacacttgcaagagtaatttgtctgtctatg 75  Q
    |||||| |||| ||| ||||||||||||||| |||||||||||||||    
T  42694841 actcacaattttcatctacacttgcaagagttatttgtctgtctatg 42694887  T

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