View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8409_high_9 (Length: 298)
Name: NF8409_high_9
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 36120710 - 36120991
Alignment:
| Q |
1 |
ttacagaattgcatttgtaacaagaaaaataatcttacaaggaatagaggatggtcaaatcaatttacttgagatccaacttcaatcttcacaaactcag |
100 |
Q |
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| T |
36120710 |
ttacagaattgcatttgtaacaagaaaaataatcttacaaggaatagaggatggtcaaatcaatttacttgagatccaacttcaatcttcacaaactcag |
36120809 |
T |
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| Q |
101 |
atgcacaactctcccagcagtttcaaacagtgtgtcaaagttattcgaattccacgacaacggtcagctaagaacatacatgagattcacaaggttggct |
200 |
Q |
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| T |
36120810 |
atgcacgactctcccagcagtttcaaacagtgtgtcaaagttattcgaattccacgacaacggtcagctaagaacatacatgagattcacaaggttggct |
36120909 |
T |
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| Q |
201 |
tgcagaactttgatccccggcatttcttttcaaagattctgatcaaattcatgaccaggataactataagttacactattat |
282 |
Q |
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| T |
36120910 |
tgcagaactttgatccccggcatttcttttcaaagattctgttcaaattcatgaccaggataactataagttacactattat |
36120991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 41927456 - 41927361
Alignment:
| Q |
2 |
tacagaattgcatttgtaacaagaaaaataatcttaca-aggaatagaggatggtcaaatcaatttacttgagatccaacttcaatcttcacaaac |
96 |
Q |
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| T |
41927456 |
tacaaaattgcaattgtaactagaaaaataatgttacacaggaatagaggatgatcaaataaatttacttgagatccaacttcgatcttcacaaac |
41927361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 41927294 - 41927191
Alignment:
| Q |
178 |
acatgagattcacaaggttggcttgcagaactttgatccccggcatttcttttcaaagattctgatcaaattcatgaccaggataactataagttacact |
277 |
Q |
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|||||||||| | |||||| |||||||||| ||||| |||| | |||||||| || ||||||| |||||||||||| || |||||| ||||| |||||| |
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| T |
41927294 |
acatgagatt-agaaggttagcttgcagaaatttgaaccccaggttttctttttaaggattctgttcaaattcatgaacatgataacaataagctacact |
41927196 |
T |
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| Q |
278 |
attat |
282 |
Q |
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||||| |
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| T |
41927195 |
attat |
41927191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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