View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8409_low_1 (Length: 619)
Name: NF8409_low_1
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 29525318 - 29525935
Alignment:
| Q |
1 |
agtaaatgttgtagcatcgtaaaggannnnnnnaatccatatatatggacaatggcaataacatcacaggaactcggaaacaatttcaacactgtacacc |
100 |
Q |
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| T |
29525318 |
agtaaatgttgtagcatcgtaaaggatttgtttaatccatatatatggacaatggcaataacatcacaggaactcggaaacaatttcaacactgtacacc |
29525417 |
T |
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| Q |
101 |
caacaccgtataaaataacaatttcaatgtgttcggattccgaggaacaaatgaattaatataaaatcagaaaccgtatagaatgtgcaagaaatacaat |
200 |
Q |
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|||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525418 |
caacaccgtatagaataacaatttcaatttgttcggattacgaggaaaaaatgaattaatataaaatcagaaaccgtatagaatgtgcaagaaatacaat |
29525517 |
T |
|
| Q |
201 |
gtgtctgatgacgaattctgagttctaaaagacatttttggcggaaataaagaattataaacagtaacagtaaacaagaaaactataaattcctacagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29525518 |
gtgtctgatgacgaattctgagttctaaaagacatttttggcagaaataaagaattataaacagtaacagtaa-caagaaaactataaattcctacagaa |
29525616 |
T |
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| Q |
301 |
taagaattataaggaacatttaaacagagggaagagataagaccagagattgttaacaaagttcagataattgttttcccacatccctgagatatataat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29525617 |
caagaattataaggaacatttaaacagagggaagagataagaccagagattgttaacaaaattcagataattgttttcccacatccctgagatatataat |
29525716 |
T |
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| Q |
401 |
tgagcttttacacatctagagcaccatcattgattctcctttaagaatcagtatgaatccctcaatcaatactcttaccatttcttgctgttaatcttat |
500 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29525717 |
tgagtttttacacatctagagcaccatcattgattctcctttaagaatcactatgaatccctcaatcaatactcttaccatttcttgcggttaatcttat |
29525816 |
T |
|
| Q |
501 |
ctgattcttagcactcgaggtatgaaaattaataatgaataattttctctcctaagactttatatatagccattagccaaagtacaagttagttacaacc |
600 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29525817 |
ctgattcttagcactcaaggtatgaaaattaataatgaataattttctctcctaagactttatatatagccattagccaaagtagaagttagttacaacc |
29525916 |
T |
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| Q |
601 |
acactaacagaaaacaatt |
619 |
Q |
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||| ||||||||||||||| |
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| T |
29525917 |
acattaacagaaaacaatt |
29525935 |
T |
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