View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8409_low_13 (Length: 308)

Name: NF8409_low_13
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8409_low_13
NF8409_low_13
[»] chr3 (3 HSPs)
chr3 (15-292)||(40136137-40136401)
chr3 (131-225)||(2410026-2410120)
chr3 (10-92)||(37334995-37335077)
[»] chr4 (1 HSPs)
chr4 (106-225)||(2635059-2635177)
[»] chr7 (1 HSPs)
chr7 (130-172)||(44638542-44638584)
[»] chr5 (3 HSPs)
chr5 (133-174)||(370808-370849)
chr5 (133-174)||(25548464-25548505)
chr5 (20-100)||(3928188-3928267)
[»] chr6 (1 HSPs)
chr6 (39-99)||(8092133-8092193)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 40136137 - 40136401
Alignment:
Q  15 tgaatgtaaaatgttttttgttttaatacatttttataaaaatgagttgaacaatgaatttaattattaaaatcaattataaaattctaatttcaagtat 114  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  40136137 tgaatgtaaaatattttttgttttaatacatttttgtaaaaatgagttcaacaatgaatttgattgttaaaatcaattataaaattctaatttcaagtat 40136236  T
Q  115 aatgaactcttgagacaaaatcagttttacttaaaaacaatcaaacatatcataatcaatgtatacacctataaaaacaattttgaccccactaaaaatg 214  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  40136237 aatgaactcttgagacaaaatcagttttacttaaaaataattaaacatatcataatcaatgtatacacctataaaagcaattttgaccccactaaaagtg 40136336  T
Q  215 aaatcaaacatctacgatcaaacatacacgtattctttaggtgatggagtggctatggatggatacatactggctatg 292  Q
    ||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40136337 aaatcaaaca-------------atacacgtattctttaggtgatggagtggctatggatggatacatactggctatg 40136401  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 2410026 - 2410120
Alignment:
Q  131 aaaatcagttttacttaaaaacaatcaaacatatcataatcaatgtatacacctataaaaacaattttgaccccactaaaaatgaaatcaaacat 225  Q
    ||||||| || ||||| | ||||  ||||||| ||| ||| ||| | ||||||| || ||||||||||||| |||| |||| |||||||||||||    
T  2410026 aaaatcaattctacttgagaacatccaaacatgtcaaaataaatttttacacctttagaaacaattttgactccaccaaaagtgaaatcaaacat 2410120  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 37334995 - 37335077
Alignment:
Q  10 tgagatgaatgtaaaatgttttttgttttaatacatttttataaaaatgagttgaacaatgaatttaattattaaaatcaatt 92  Q
    |||| |||| ||||| || ||| ||| | ||||||||  |||||||||||||||||||||||||| || | | ||||||||||    
T  37334995 tgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaatt 37335077  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 2635177 - 2635059
Alignment:
Q  106 ttcaagtataatgaactcttgagacaaaatcagttttacttaaaaacaatcaaacatatcataatcaatgtatacacctataaaaacaattttgacccca 205  Q
    |||||| ||||| || ||| ||| ||||||||||| ||||||||| ||||||||||| ||| ||||||| | ||||| | || || ||||||||  |||     
T  2635177 ttcaagcataatcaattctggaggcaaaatcagttctacttaaaagcaatcaaacatgtcaaaatcaat-tttacacttctagaatcaattttggtccct 2635079  T
Q  206 ctaaaaatgaaatcaaacat 225  Q
    |||||| ||||| |||||||    
T  2635078 ctaaaagtgaaaccaaacat 2635059  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 44638542 - 44638584
Alignment:
Q  130 caaaatcagttttacttaaaaacaatcaaacatatcataatca 172  Q
    |||||||| ||||||| |||||||||||||||| |||||||||    
T  44638542 caaaatcaattttactaaaaaacaatcaaacatttcataatca 44638584  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 370808 - 370849
Alignment:
Q  133 aatcagttttacttaaaaacaatcaaacatatcataatcaat 174  Q
    ||||| || ||||||||||||| |||||||||||||||||||    
T  370808 aatcaattctacttaaaaacaaccaaacatatcataatcaat 370849  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 25548505 - 25548464
Alignment:
Q  133 aatcagttttacttaaaaacaatcaaacatatcataatcaat 174  Q
    ||||| |||||||||||| ||||||||||| |||||||||||    
T  25548505 aatcaattttacttaaaagcaatcaaacatgtcataatcaat 25548464  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 3928267 - 3928188
Alignment:
Q  20 gtaaaatgttttttgttttaatacatttttataaaaatgagttgaacaatgaatttaattattaaaatcaattataaaatt 100  Q
    |||||||| ||| ||||| |||| |||  ||||||| ||||||||  ||| ||||||||| |||||||||||| |||||||    
T  3928267 gtaaaatgatttatgtttgaatatattggtataaaa-tgagttgagtaataaatttaattgttaaaatcaattctaaaatt 3928188  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 8092133 - 8092193
Alignment:
Q  39 aatacatttttataaaaatgagttgaacaatgaatttaattattaaaatcaattataaaat 99  Q
    |||| |||| ||||||||||| ||||||||| ||||||| ||| ||| |||||| ||||||    
T  8092133 aatatatttatataaaaatgaattgaacaataaatttaagtataaaattcaattctaaaat 8092193  T

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