View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8409_low_2 (Length: 540)
Name: NF8409_low_2
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 24046183 - 24045676
Alignment:
| Q |
18 |
tcaacaaccaactagtcaatgttataagctcataactacttcttttctttgtctcagcagctacttcaccaatagccatgcatctcactcctccagagcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24046183 |
tcaacaaccaactagtcaatgttataagctcataactacttcttttctttgtctcagcagctacttcaccaacagccatgcatctcactcctccagagcc |
24046084 |
T |
|
| Q |
118 |
actcacatgctttcttcttgaacttgataacactgatttcgtgtcgaaaacacaaagttggaagggacatagacgtgagggagaacaaggttttgagaat |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24046083 |
actcacatgctttcttcttgaacttgataacactgatttcgtgtcgaaaacacaaagttggaagggacatagacgtgagggagaacaaggttttgagaat |
24045984 |
T |
|
| Q |
218 |
attaattgtgatgatgctgttgctgctgccattgcaaccatttttgttgaaatttgcactagtgtgtttctaggggtgaatgagttgcatggatggattg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24045983 |
attaattgtgatgatgctgttgctgctgccattgcaaccatttttgttgaaatttgcactagtgtgtttctagtggtgaatgagttgcatggatggattg |
24045884 |
T |
|
| Q |
318 |
tgttgtaaggtactgaaggaaaagagattgtaaggttcgtaatggtttgtgatactattggtcccacttatcttcttcatatcattttgc-tttgtgatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24045883 |
tgttgtaaggtactgaaggaaaagagattgtaaggttcgtaatggtttgtgatactattggtcccacttatcttcttcatatcattttgcttttgtgatt |
24045784 |
T |
|
| Q |
417 |
gtggattccaatggttctgttttgccacggtggannnnnnnnnnnnnnnnncttgaatgaaaaggtagtcttaacaattttaaaactaatttatgccttt |
516 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24045783 |
gtggattccaatggttctgttttgccacggtggattttttgtctgttttttcttgaatgaaaaggtagtcttaacaattttaaaactaatttatgccttt |
24045684 |
T |
|
| Q |
517 |
ttaagtat |
524 |
Q |
| |
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|||||||| |
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| T |
24045683 |
ttaagtat |
24045676 |
T |
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