View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8409_low_20 (Length: 241)
Name: NF8409_low_20
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_low_20 |
 | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0137 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 20534 - 20315
Alignment:
| Q |
4 |
actttattaattcctattatattagttttgttttagggaacctattatattagtgtattgtcggatgnnnnnnncggtttaaatgatcatcgttcaaaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20534 |
actttattaattcctattatattagtttttttttagggaacctattatatttgtgtattgtcggatgaaaaatacggtttaaatgatcatcgttcaaaac |
20435 |
T |
|
| Q |
104 |
ataattgggcactacaacaaggtgtaagtttggccattaacagtgttgtcctttaatttgcaagtacaatgtgtgcctccaatcattccacccgacatca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20434 |
ataattgggcactacaacaaggtgtaagtttggccattaacagtgttgtcctttaatatgcaagtacaatgtgtgtctccaatcattccacccgacatca |
20335 |
T |
|
| Q |
204 |
acatgatacgaggtttgtat |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20334 |
acatgatacgaggtttgtat |
20315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3917053 - 3916830
Alignment:
| Q |
1 |
accactttattaattcctattatattagttttgtttt-agggaacctattatattagtgtattgtcggatgnnnnnnncggtttaaatgatcatcgttca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3917053 |
accactttattaattcctattatattagttttttttttagggaacctattatatttgtgtattgtcggatgaaaaatacggtttaaatgatcatcgttca |
3916954 |
T |
|
| Q |
100 |
aaacataattgggcactacaacaaggtgtaagtttggccattaacagtgttgtcctttaatttgcaagtacaatgtgtgcctccaatcattccacccgac |
199 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3916953 |
aaacataattgggcactacaacaaggggaaagtttggccattaacagtgttgtcctttaatttgcaagtacaatgtgtgcctccaatcattccacccgac |
3916854 |
T |
|
| Q |
200 |
atcaacatgatacgaggtttgtat |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3916853 |
atcaacatgatacgaggtttgtat |
3916830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University