View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8409_low_21 (Length: 227)
Name: NF8409_low_21
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_low_21 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 20742 - 20622
Alignment:
| Q |
1 |
atttggtttaagtaacttatgacgaacatttgtactttttt-acataatttgttcgtttagatccattttttctattgttgaagtgcatatgtttaaaag |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20742 |
atttggtttaagtaacttatgacgaacatttgtactttttttaaataatttgttcgtttagatccattttttttattgttgaagtgcatatgtttaaaag |
20643 |
T |
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| Q |
100 |
aataattgtttcacaatcctt |
120 |
Q |
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||||||||||||||||||||| |
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| T |
20642 |
aataattgtttcacaatcctt |
20622 |
T |
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Target: scaffold0137; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 20562 - 20524
Alignment:
| Q |
189 |
agaatttattaacccgttaaagacaaccactttattaat |
227 |
Q |
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| T |
20562 |
agaatttattaacccgttaaagacaacgactttattaat |
20524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3917258 - 3917142
Alignment:
| Q |
1 |
atttggtttaagtaacttatgacgaacatttgtactttttt-acataatttgttcgtttagatccattttttctattgttgaagtgcatatgtttaaaag |
99 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3917258 |
atttgatttaagtaacttatgacgaacatttgtactttttttacataatttgttcgtttagatccattttttttattgttgaagtgcatatgtttaaaag |
3917159 |
T |
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| Q |
100 |
aataattgtttcacaat |
116 |
Q |
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||||||||||||||||| |
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| T |
3917158 |
aataattgtttcacaat |
3917142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 3917078 - 3917040
Alignment:
| Q |
189 |
agaatttattaacccgttaaagacaaccactttattaat |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
3917078 |
agaatttattaacccgttaaagacaaccactttattaat |
3917040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18181236 - 18181273
Alignment:
| Q |
1 |
atttggtttaagtaacttatgacgaacatttgtacttt |
38 |
Q |
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||||||||||||||| ||||||| |||||||||||||| |
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| T |
18181236 |
atttggtttaagtaatttatgacaaacatttgtacttt |
18181273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5151928 - 5151967
Alignment:
| Q |
1 |
atttggtttaagtaacttatgacgaacatttgtactttttt |
41 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
5151928 |
atttggtttaagtaa-ttatgacaaacatttgtactttttt |
5151967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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