View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8409_low_4 (Length: 452)
Name: NF8409_low_4
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 52 - 437
Target Start/End: Original strand, 29525834 - 29526220
Alignment:
| Q |
52 |
aggtataaaaattaataatgaaaaattttctctactgaaacgttatatatatcaagtaaccaaggaacaagatatgtacaacctcactaacagaaaacaa |
151 |
Q |
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| T |
29525834 |
aggtatgaaaattaataatgaataattttctctcctaagactttatatatagccattagccaaagtagaagttagttacaaccacattaacagaaaacaa |
29525933 |
T |
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| Q |
152 |
ttaactgccaaggttgattgggaaggcacacaattagtaaggcaaagtgatttgcttcactgatcttcaaacaagtcagaccccttaagtaaatttaatc |
251 |
Q |
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| T |
29525934 |
ttaactgccaagcttgattgggaaggcacacaattagtaaggcaaagtgatttgcttcactgatcttcaaaaaagtcagaccccttaagtaaatttaatc |
29526033 |
T |
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| Q |
252 |
atcaattaacattgattcttagcaaatctcgaaaatgtttaataaaaaatgtttaaatttgctaagaggaatcggtttggtgatcatatctgcaggattg |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29526034 |
atcaattaacattgattcttagcaaatctcgaaaatgtttaataaaaaatgtttaaatttgctaagaggaatcggtttagtgatcatatctgcaggattg |
29526133 |
T |
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| Q |
352 |
tactaagtatggaactcgaccacatcaatcaatttaa-nnnnnnncaataacatctcttatgaaatcgagcctaacatcaatgcatt |
437 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29526134 |
tactaagtatggaacttgaccacatcaatcaatttaattttttttcaataacatctcttatgaaatcgagcctaacatcaatgcatt |
29526220 |
T |
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