View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8409_low_6 (Length: 448)

Name: NF8409_low_6
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8409_low_6
NF8409_low_6
[»] scaffold0695 (1 HSPs)
scaffold0695 (1-366)||(3909-4281)
[»] chr8 (10 HSPs)
chr8 (1-366)||(14126348-14126720)
chr8 (1-373)||(14090976-14091359)
chr8 (168-337)||(40307145-40307320)
chr8 (157-222)||(5339060-5339125)
chr8 (418-448)||(5299931-5299961)
chr8 (418-448)||(6098503-6098533)
chr8 (418-448)||(9864323-9864353)
chr8 (418-448)||(41910973-41911003)
chr8 (419-448)||(466018-466047)
chr8 (419-448)||(36694951-36694980)
[»] chr3 (9 HSPs)
chr3 (102-336)||(35987844-35988079)
chr3 (157-291)||(42722291-42722428)
chr3 (167-281)||(43721659-43721776)
chr3 (418-448)||(14586649-14586679)
chr3 (418-448)||(29163985-29164015)
chr3 (418-448)||(33698320-33698350)
chr3 (418-448)||(34133102-34133132)
chr3 (418-448)||(46297741-46297771)
chr3 (419-448)||(4015628-4015657)
[»] chr7 (18 HSPs)
chr7 (102-316)||(20216993-20217207)
chr7 (418-448)||(9355806-9355836)
chr7 (418-448)||(10359194-10359224)
chr7 (418-448)||(12165903-12165933)
chr7 (418-448)||(15612739-15612769)
chr7 (157-191)||(20221579-20221613)
chr7 (418-448)||(21991787-21991817)
chr7 (418-448)||(22687390-22687420)
chr7 (418-448)||(26588064-26588094)
chr7 (157-191)||(30713540-30713574)
chr7 (418-448)||(37704308-37704338)
chr7 (418-448)||(43686191-43686221)
chr7 (418-448)||(44413359-44413389)
chr7 (418-448)||(44598817-44598847)
chr7 (419-448)||(4583071-4583100)
chr7 (328-373)||(20217238-20217283)
chr7 (235-280)||(25784453-25784498)
chr7 (418-446)||(6546670-6546698)
[»] chr6 (2 HSPs)
chr6 (102-280)||(13681401-13681579)
chr6 (206-340)||(30740780-30740913)
[»] chr5 (6 HSPs)
chr5 (157-291)||(10014254-10014391)
chr5 (418-448)||(7693406-7693436)
chr5 (418-448)||(12910531-12910561)
chr5 (418-448)||(25500895-25500925)
chr5 (418-448)||(36866938-36866968)
chr5 (418-448)||(40133561-40133591)
[»] chr4 (9 HSPs)
chr4 (206-301)||(6000195-6000290)
chr4 (157-291)||(26937234-26937371)
chr4 (418-448)||(4598167-4598197)
chr4 (418-448)||(32592269-32592299)
chr4 (418-448)||(37775843-37775873)
chr4 (418-448)||(47253916-47253946)
chr4 (419-448)||(17167890-17167919)
chr4 (419-448)||(17173467-17173496)
chr4 (254-291)||(36240940-36240977)
[»] chr1 (10 HSPs)
chr1 (168-281)||(28794340-28794456)
chr1 (418-448)||(238487-238517)
chr1 (418-448)||(3535104-3535134)
chr1 (418-448)||(10181982-10182012)
chr1 (418-448)||(32216227-32216257)
chr1 (419-448)||(1547452-1547481)
chr1 (157-222)||(26116196-26116261)
chr1 (418-447)||(27227460-27227489)
chr1 (419-448)||(48620810-48620839)
chr1 (418-446)||(7079039-7079067)
[»] scaffold0318 (1 HSPs)
scaffold0318 (418-448)||(12085-12115)
[»] chr2 (9 HSPs)
chr2 (418-448)||(3177115-3177145)
chr2 (157-227)||(3409093-3409163)
chr2 (418-448)||(4167098-4167128)
chr2 (418-448)||(19314027-19314057)
chr2 (418-448)||(19424625-19424655)
chr2 (418-448)||(27349936-27349966)
chr2 (418-448)||(29242135-29242165)
chr2 (418-448)||(33660365-33660395)
chr2 (418-448)||(44286125-44286155)


Alignment Details
Target: scaffold0695 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 4281 - 3909
Alignment:
Q  1 ggctcagggtctggcaccatgggacgcttccccctccaccttcgctgcgactcgccgtcttccatatcctcctccattgcctcaagctcctccccaaact 100  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||| ||    
T  4281 ggctcagggtctggcaccacgggacgcttccccctccgccttcgctacgactcgccgtcttccatatcctcctccgttccctcaagctcctcctcaagct 4182  T
Q  101 tctcctcctccatttgatgttgatgatgcatgtccatctcatcattctctt-------gctcatgctccggctgaggctcgacatcagcacgacgtcccc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||    
T  4181 tctcctcctccatttgatgttgatgatgcatgtccatctcatcattctcttttctcttgctcatgctccggctgaggctcggcatcagcacgacgtcccc 4082  T
Q  194 tggcactcagatgcctcggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagcataccctgccacccttacacgctgagtaga 293  Q
    || |||  ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  4081 tgacacctagatgcctcggaacaacaccatcctcctccattcgttggagacactctctcctaagggaagcatgccctgccacccttacacgctgagtaga 3982  T
Q  294 ggagaaaccttttataacatgcacaaaacggaatcaacacaaaatagaagatcaaaaatcattcttggtgttt 366  Q
    ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  3981 ggagaaaccttctataacatgcacaaaacgaaatcaacagaaaatagaagatcaaaaatcattcttggtgttt 3909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 14126348 - 14126720
Alignment:
Q  1 ggctcagggtctggcaccatgggacgcttccccctccaccttcgctgcgactcgccgtcttccatatcctcctccattgcctcaagctcctccccaaact 100  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||| ||    
T  14126348 ggctcagggtctggcaccacgggacgcttccccctccgccttcgctacgactcgccgtcttccatatcctcctccgttccctcaagctcctcctcaagct 14126447  T
Q  101 tctcctcctccatttgatgttgatgatgcatgtccatctcatcattct-------cttgctcatgctccggctgaggctcgacatcagcacgacgtcccc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||    
T  14126448 tctcctcctccatttgatgttgatgatgcatgtccatctcatcattctcttttctcttgctcatgctccggctgaggctcggcatcagcacgacgtcccc 14126547  T
Q  194 tggcactcagatgcctcggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagcataccctgccacccttacacgctgagtaga 293  Q
    || |||  ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  14126548 tgacacctagatgcctcggaacaacaccatcctcctccattcgttggagacactctctcctaagggaagcatgccctgccacccttacacgctgagtaga 14126647  T
Q  294 ggagaaaccttttataacatgcacaaaacggaatcaacacaaaatagaagatcaaaaatcattcttggtgttt 366  Q
    ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  14126648 ggagaaaccttctataacatgcacaaaacgaaatcaacagaaaatagaagatcaaaaatcattcttggtgttt 14126720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 14090976 - 14091359
Alignment:
Q  1 ggctcagggtctggcaccatgggacgcttccccctccaccttcgctgcgactcgccgtcttccatatcctcctccattgcctcaagctcctccccaaact 100  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14090976 ggctcagggtctggcaccatgggacgcttccccctccgcctttgctgcgactcgccgtcttccatatcctcctccattgcctcaagctcctcctcaaact 14091075  T
Q  101 tctcctcctccatttgatgttgatgatgcatgtccatctcatcattctcttgctcatgctccggctgaggctcgacatcagcacgacgtcccctggcact 200  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || |||     
T  14091076 tctcctcctccatttgattttaatgatgcacgtccatctcatcattctcttgctcatgctccagctgaggctcgacatcagcacggcgtcccttgacacc 14091175  T
Q  201 cagatgcctcggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagcataccctgccacccttacacgctgagtagaggagaaa 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||    
T  14091176 cagatgcctcggaacaacaccatcctcctccattcgttggagacgctctctcctactggaagcatgctctgccacccttacacgctgagtagaggagaaa 14091275  T
Q  301 ccttttataacatgcacaaaacggaat-----------caacacaaaatagaagatcaaaaatcattcttggtgtttctagatt 373  Q
    |||| |||||||||||||||||| |||           ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  14091276 ccttctataacatgcacaaaacgaaatcagcacaagcacaatacaaaatagaagatcaaaaatcattcttggtgtttctggatt 14091359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 168 - 337
Target Start/End: Original strand, 40307145 - 40307320
Alignment:
Q  168 aggctcgacatcagcacgacgtcccctggcactcagatgcctcggaa---caacaccatcctcctctattcgttggagacgctctcttctacgggaagca 264  Q
    |||||||||||||||||||||||| || |||| | || |||||||||   ||||||| |||||||| |  ||||||||||||||||| ||||||||||||    
T  40307145 aggctcgacatcagcacgacgtcctctagcaccccgacgcctcggaagaacaacaccttcctcctccagccgttggagacgctctctcctacgggaagca 40307244  T
Q  265 taccctgccacccttacacgctgagta---gaggagaaaccttttataacatgcacaaaacggaatcaacacaaaa 337  Q
    | || |||| ||||||| ||| |||||   ||||   |||||| ||||||||||||| |||  |||||||||||||    
T  40307245 tgccatgcctcccttacgcgccgagtattagaggttgaaccttctataacatgcacacaacacaatcaacacaaaa 40307320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 5339125 - 5339060
Alignment:
Q  157 tgctccggctgaggctcgacatcagcacgacgtcccctggcactcagatgcctcggaacaacacca 222  Q
    |||||||||||| |||||||||||||||||||||| || |||| | || ||||||||  |||||||    
T  5339125 tgctccggctgatgctcgacatcagcacgacgtcctctagcaccccgacgcctcggaggaacacca 5339060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 5299961 - 5299931
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  5299961 cttgttttaagtgtaacaccccacaaagtgt 5299931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 6098533 - 6098503
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  6098533 cttgttttaagtgtaacaccccacaaagtgt 6098503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 9864323 - 9864353
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  9864323 cttgttttaagtgtaacaccccacaaagtgt 9864353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 41911003 - 41910973
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  41911003 cttgttttaagtgtaacaccccacaaagtgt 41910973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 466018 - 466047
Alignment:
Q  419 ttgttttaagtgtaacaccccacaaagtgt 448  Q
    ||||||||||||||||||||||||||||||    
T  466018 ttgttttaagtgtaacaccccacaaagtgt 466047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Complemental strand, 36694980 - 36694951
Alignment:
Q  419 ttgttttaagtgtaacaccccacaaagtgt 448  Q
    ||||||||||||||||||||||||||||||    
T  36694980 ttgttttaagtgtaacaccccacaaagtgt 36694951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 102 - 336
Target Start/End: Complemental strand, 35988079 - 35987844
Alignment:
Q  102 ctcctcctccatttgatgttgatgatgcatgtccatctcatcattctctt-gctcatgctccggctgaggctcgacatcagcacgacgtcccctggcact 200  Q
    ||||||||||||||| ||||| || |||| |||||||||||||| | ||| ||||||||||| ||| |||||||||||||||| ||||||||||| |||     
T  35988079 ctcctcctccatttgttgttgttgttgcacgtccatctcatcatacactttgctcatgctccagctcaggctcgacatcagcatgacgtcccctgccacc 35987980  T
Q  201 cagatgcctcggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagcataccctgccacccttacacgctgagtagaggagaaa 300  Q
    | ||  |||||||||||||||| ||||||| ||  |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||    
T  35987979 ccgacacctcggaacaacaccaccctcctccatatgttggagacgctctctcctacgggaagcatgctctgccacccttacacgctgagtagaggaggaa 35987880  T
Q  301 ccttttataacatgcacaaaacggaatcaacacaaa 336  Q
    |||| |||||||||||||||||  ||||| ||||||    
T  35987879 ccttctataacatgcacaaaacaaaatcagcacaaa 35987844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 42722428 - 42722291
Alignment:
Q  157 tgctccggctgaggctcgacatcagcacgacgtcccctggcactcagatgcctcggaacaacacca---tcctcctctattcgttggagacgctctcttc 253  Q
    |||||||||||| ||||||||||||||| |||||| ||  ||| | || ||||||||  |||||||   |||||||  |  ||| ||||||||||||| |    
T  42722428 tgctccggctgatgctcgacatcagcacaacgtcctctaccaccccgacgcctcggaggaacaccaccttcctcctgcagccgtcggagacgctctctcc 42722329  T
Q  254 tacgggaagcataccctgccacccttacacgctgagta 291  Q
    || ||||||||| ||||||| ||||||| ||| |||||    
T  42722328 tatgggaagcatgccctgcctcccttacgcgccgagta 42722291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 43721776 - 43721659
Alignment:
Q  167 gaggctcgacatcagcacgacgtcccctggcactcagatgcctc---ggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagc 263  Q
    ||||||||||||||||||||||||| || |||| | || |||||   |||||| |||| || |||||||  ||||||  |||| ||||  ||||||||||    
T  43721776 gaggctcgacatcagcacgacgtcctctagcaccccgacgcctcggaggaacaccaccttcatcctctagccgttggctacgcgctctcttacgggaagc 43721677  T
Q  264 ataccctgccacccttac 281  Q
    || ||||||| |||||||    
T  43721676 atgccctgccccccttac 43721659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 14586679 - 14586649
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  14586679 cttgttttaagtgtaacaccccacaaagtgt 14586649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 29163985 - 29164015
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  29163985 cttgttttaagtgtaacaccccacaaagtgt 29164015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 33698320 - 33698350
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  33698320 cttgttttaagtgtaacaccccacaaagtgt 33698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 34133102 - 34133132
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  34133102 cttgttttaagtgtaacaccccacaaagtgt 34133132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 46297771 - 46297741
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  46297771 cttgttttaagtgtaacaccccacaaagtgt 46297741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 4015628 - 4015657
Alignment:
Q  419 ttgttttaagtgtaacaccccacaaagtgt 448  Q
    ||||||||||||||||||||||||||||||    
T  4015628 ttgttttaagtgtaacaccccacaaagtgt 4015657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 102 - 316
Target Start/End: Original strand, 20216993 - 20217207
Alignment:
Q  102 ctcctcctccatttgatgttgatgatgcatgtccatctcatcattctcttgctcatgctccggctgaggctcgacatcagcacgacgtcccctggcactc 201  Q
    |||||| | |||||| ||||| || |||| ||||| |||||||| |||||||||||||||||| | | ||||||||||  ||| |||||||||| ||| |    
T  20216993 ctcctcatacatttgctgttgctgctgcacgtccacctcatcatactcttgctcatgctccgggtcatgctcgacatcgacacaacgtcccctgccaccc 20217092  T
Q  202 agatgcctcggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagcataccctgccacccttacacgctgagtagaggagaaac 301  Q
     || ||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||||||||||| |||    
T  20217093 tgacgcctcggaacaacaccatcctcctccatctgttggagacgctctctcctacgggaagcatgccctgccacccttacgcgcggagtagaggaggaac 20217192  T
Q  302 cttttataacatgca 316  Q
    ||||| |||||||||    
T  20217193 cttttgtaacatgca 20217207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 9355836 - 9355806
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  9355836 cttgttttaagtgtaacaccccacaaagtgt 9355806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 10359224 - 10359194
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  10359224 cttgttttaagtgtaacaccccacaaagtgt 10359194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 12165903 - 12165933
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  12165903 cttgttttaagtgtaacaccccacaaagtgt 12165933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 15612769 - 15612739
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  15612769 cttgttttaagtgtaacaccccacaaagtgt 15612739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 20221579 - 20221613
Alignment:
Q  157 tgctccggctgaggctcgacatcagcacgacgtcc 191  Q
    |||||||||||| ||||||||||||||||||||||    
T  20221579 tgctccggctgatgctcgacatcagcacgacgtcc 20221613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 21991787 - 21991817
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  21991787 cttgttttaagtgtaacaccccacaaagtgt 21991817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 22687390 - 22687420
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  22687390 cttgttttaagtgtaacaccccacaaagtgt 22687420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 26588094 - 26588064
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  26588094 cttgttttaagtgtaacaccccacaaagtgt 26588064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 30713540 - 30713574
Alignment:
Q  157 tgctccggctgaggctcgacatcagcacgacgtcc 191  Q
    |||||||||||| ||||||||||||||||||||||    
T  30713540 tgctccggctgatgctcgacatcagcacgacgtcc 30713574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 37704308 - 37704338
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  37704308 cttgttttaagtgtaacaccccacaaagtgt 37704338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 43686191 - 43686221
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  43686191 cttgttttaagtgtaacaccccacaaagtgt 43686221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 44413389 - 44413359
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  44413389 cttgttttaagtgtaacaccccacaaagtgt 44413359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 44598817 - 44598847
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  44598817 cttgttttaagtgtaacaccccacaaagtgt 44598847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 4583071 - 4583100
Alignment:
Q  419 ttgttttaagtgtaacaccccacaaagtgt 448  Q
    ||||||||||||||||||||||||||||||    
T  4583071 ttgttttaagtgtaacaccccacaaagtgt 4583100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 20217238 - 20217283
Alignment:
Q  328 caacacaaaatagaagatcaaaaatcattcttggtgtttctagatt 373  Q
    |||||||||| ||||||||||||||||| || |||||||| |||||    
T  20217238 caacacaaaacagaagatcaaaaatcatactgggtgtttccagatt 20217283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 25784453 - 25784498
Alignment:
Q  235 cgttggagacgctctcttctacgggaagcataccctgccaccctta 280  Q
    |||||| |||||||||| ||||||||||||| ||||||| ||||||    
T  25784453 cgttggcgacgctctctcctacgggaagcatgccctgcctccctta 25784498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 446
Target Start/End: Original strand, 6546670 - 6546698
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagt 446  Q
    |||||||||||||||||||||||||||||    
T  6546670 cttgttttaagtgtaacaccccacaaagt 6546698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 102 - 280
Target Start/End: Complemental strand, 13681579 - 13681401
Alignment:
Q  102 ctcctcctccatttgatgttgatgatgcatgtccatctcatcattctcttgctcatgctccggctgaggctcgacatcagcacgacgtcccctggcactc 201  Q
    |||||| |||||||| ||||| || |||| |||||||||||||| |||||||||||| ||||||||||||||||| |||  ||||||| ||||| ||| |    
T  13681579 ctcctcatccatttgctgttgttgctgcacgtccatctcatcatactcttgctcatgttccggctgaggctcgacttcaatacgacgtgccctgccaccc 13681480  T
Q  202 agatgcctcggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagcataccctgccaccctta 280  Q
     || ||||| ||  ||  | |||||||||    ||||||||| ||| ||||||||||||||||| |  |||||||||||    
T  13681479 cgacgcctcagacgaatgcaatcctcctccgcccgttggagatgctatcttctacgggaagcatgcattgccaccctta 13681401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 340
Target Start/End: Complemental strand, 30740913 - 30740780
Alignment:
Q  206 gcctcggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagcataccctgccacccttacacgctgagtagaggagaaaccttt 305  Q
    ||||||||||||||||| ||||||| || | ||||  ||||||||| || |||||||||| ||||||| |  |||| | |||||| |||||  ||||||     
T  30740913 gcctcggaacaacaccaccctcctccatccattgggtacgctctctccttcgggaagcatgccctgcctcttttacgc-ctgagtggaggatgaaccttc 30740815  T
Q  306 tataacatgcacaaaacggaatcaacacaaaatag 340  Q
    | ||||| ||||| |||  ||||| ||||||||||    
T  30740814 tgtaacacgcacacaacacaatcatcacaaaatag 30740780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 10014391 - 10014254
Alignment:
Q  157 tgctccggctgaggctcgacatcagcacgacgtcccctggcactcagatgcctcggaacaacacca---tcctcctctattcgttggagacgctctcttc 253  Q
    |||||||||||| |||||||||||||||  ||||| || |||| | || ||||||||  |||||||   || ||||| |  ||||||  |||| |||| |    
T  10014391 tgctccggctgatgctcgacatcagcacagcgtcctctagcaccccgacgcctcggaggaacaccaccttcatcctccagccgttggctacgcgctctcc 10014292  T
Q  254 tacgggaagcataccctgccacccttacacgctgagta 291  Q
    |||||||||||| |||| || |||||||||||||||||    
T  10014291 tacgggaagcatgccctacctcccttacacgctgagta 10014254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 7693406 - 7693436
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  7693406 cttgttttaagtgtaacaccccacaaagtgt 7693436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 12910531 - 12910561
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  12910531 cttgttttaagtgtaacaccccacaaagtgt 12910561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 25500925 - 25500895
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  25500925 cttgttttaagtgtaacaccccacaaagtgt 25500895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 36866938 - 36866968
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  36866938 cttgttttaagtgtaacaccccacaaagtgt 36866968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 40133561 - 40133591
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  40133561 cttgttttaagtgtaacaccccacaaagtgt 40133591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 301
Target Start/End: Complemental strand, 6000290 - 6000195
Alignment:
Q  206 gcctcggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagcataccctgccacccttacacgctgagtagaggagaaac 301  Q
    |||||||| ||||||||||| |||| ||| |||||  ||||||||| |||||| ||||||  ||||||||||||||  ||| ||||||||| ||||    
T  6000290 gcctcggagcaacaccatccacctccatttgttgggtacgctctctcctacggaaagcatgtcctgccacccttacgtgctaagtagaggataaac 6000195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 26937371 - 26937234
Alignment:
Q  157 tgctccggctgaggctcgacatcagcacgacgtcccctggcactcagatgcctcggaacaacacca---tcctcctctattcgttggagacgctctcttc 253  Q
    ||||| |||||| ||||||||||||||| | |||| ||  ||| | || ||||||||  |||||||   |||||||  |  ||| ||||||||||||| |    
T  26937371 tgctctggctgatgctcgacatcagcacaatgtcctctaccaccccgacgcctcggaggaacaccaccttcctcctgcagccgtcggagacgctctctcc 26937272  T
Q  254 tacgggaagcataccctgccacccttacacgctgagta 291  Q
    || ||||||||| ||||||| ||||||| |||||||||    
T  26937271 tatgggaagcatgccctgcctcccttacgcgctgagta 26937234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 4598167 - 4598197
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  4598167 cttgttttaagtgtaacaccccacaaagtgt 4598197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 32592269 - 32592299
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  32592269 cttgttttaagtgtaacaccccacaaagtgt 32592299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 37775843 - 37775873
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  37775843 cttgttttaagtgtaacaccccacaaagtgt 37775873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 47253916 - 47253946
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  47253916 cttgttttaagtgtaacaccccacaaagtgt 47253946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 17167890 - 17167919
Alignment:
Q  419 ttgttttaagtgtaacaccccacaaagtgt 448  Q
    ||||||||||||||||||||||||||||||    
T  17167890 ttgttttaagtgtaacaccccacaaagtgt 17167919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 17173467 - 17173496
Alignment:
Q  419 ttgttttaagtgtaacaccccacaaagtgt 448  Q
    ||||||||||||||||||||||||||||||    
T  17173467 ttgttttaagtgtaacaccccacaaagtgt 17173496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 36240977 - 36240940
Alignment:
Q  254 tacgggaagcataccctgccacccttacacgctgagta 291  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  36240977 tacgggaagcatgccctgcctcccttacacgctgagta 36240940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 281
Target Start/End: Original strand, 28794340 - 28794456
Alignment:
Q  168 aggctcgacatcagcacgacgtcccctggcactcagatgcctc---ggaacaacaccatcctcctctattcgttggagacgctctcttctacgggaagca 264  Q
    |||||||||||||||||| ||||| || |||| | ||||||||   |||||| |||| || |||||||  ||||||  |||| |||| ||||||||||||    
T  28794340 aggctcgacatcagcacggcgtcctctagcaccccgatgcctcggaggaacaccaccttcatcctctagccgttggctacgcgctctcctacgggaagca 28794439  T
Q  265 taccctgccacccttac 281  Q
    | |||| || |||||||    
T  28794440 tgccctacctcccttac 28794456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 238517 - 238487
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  238517 cttgttttaagtgtaacaccccacaaagtgt 238487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 3535104 - 3535134
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  3535104 cttgttttaagtgtaacaccccacaaagtgt 3535134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 10182012 - 10181982
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  10182012 cttgttttaagtgtaacaccccacaaagtgt 10181982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 32216227 - 32216257
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  32216227 cttgttttaagtgtaacaccccacaaagtgt 32216257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 1547452 - 1547481
Alignment:
Q  419 ttgttttaagtgtaacaccccacaaagtgt 448  Q
    ||||||||||||||||||||||||||||||    
T  1547452 ttgttttaagtgtaacaccccacaaagtgt 1547481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 26116196 - 26116261
Alignment:
Q  157 tgctccggctgaggctcgacatcagcacgacgtcccctggcactcagatgcctcggaacaacacca 222  Q
    |||||||||||| |||||||||||||||| ||||| || |||| | || ||||||||  |||||||    
T  26116196 tgctccggctgatgctcgacatcagcacggcgtcctctagcaccccgacgcctcggaggaacacca 26116261  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 27227489 - 27227460
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtg 447  Q
    ||||||||||||||||||||||||||||||    
T  27227489 cttgttttaagtgtaacaccccacaaagtg 27227460  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 48620810 - 48620839
Alignment:
Q  419 ttgttttaagtgtaacaccccacaaagtgt 448  Q
    ||||||||||||||||||||||||||||||    
T  48620810 ttgttttaagtgtaacaccccacaaagtgt 48620839  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 446
Target Start/End: Complemental strand, 7079067 - 7079039
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagt 446  Q
    |||||||||||||||||||||||||||||    
T  7079067 cttgttttaagtgtaacaccccacaaagt 7079039  T

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Target: scaffold0318 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 12085 - 12115
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  12085 cttgttttaagtgtaacaccccacaaagtgt 12115  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 3177115 - 3177145
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  3177115 cttgttttaagtgtaacaccccacaaagtgt 3177145  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 3409093 - 3409163
Alignment:
Q  157 tgctccggctgaggctcgacatcagcacgacgtcccctggcactcagatgcctcggaacaacaccatcctc 227  Q
    |||||||||||| ||||||||||||||| |||||| || |||| | || ||||||||  ||||||| ||||    
T  3409093 tgctccggctgatgctcgacatcagcacaacgtcctctagcaccccgacgcctcggaggaacaccaccctc 3409163  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 4167098 - 4167128
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  4167098 cttgttttaagtgtaacaccccacaaagtgt 4167128  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 19314027 - 19314057
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  19314027 cttgttttaagtgtaacaccccacaaagtgt 19314057  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 19424655 - 19424625
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  19424655 cttgttttaagtgtaacaccccacaaagtgt 19424625  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 27349966 - 27349936
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  27349966 cttgttttaagtgtaacaccccacaaagtgt 27349936  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 29242165 - 29242135
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  29242165 cttgttttaagtgtaacaccccacaaagtgt 29242135  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 33660395 - 33660365
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  33660395 cttgttttaagtgtaacaccccacaaagtgt 33660365  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 44286125 - 44286155
Alignment:
Q  418 cttgttttaagtgtaacaccccacaaagtgt 448  Q
    |||||||||||||||||||||||||||||||    
T  44286125 cttgttttaagtgtaacaccccacaaagtgt 44286155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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