View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8409_low_7 (Length: 398)

Name: NF8409_low_7
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8409_low_7
NF8409_low_7
[»] scaffold0065 (5 HSPs)
scaffold0065 (89-388)||(44856-45173)
scaffold0065 (166-388)||(50120-50342)
scaffold0065 (19-70)||(49902-49953)
scaffold0065 (89-162)||(50003-50076)
scaffold0065 (34-75)||(44789-44830)
[»] chr7 (1 HSPs)
chr7 (201-388)||(3919548-3919735)
[»] chr8 (16 HSPs)
chr8 (185-388)||(3142562-3142765)
chr8 (201-376)||(2911536-2911711)
chr8 (182-376)||(2711691-2711885)
chr8 (187-330)||(3001875-3002018)
chr8 (197-376)||(2916536-2916715)
chr8 (204-330)||(9851554-9851680)
chr8 (189-330)||(2988861-2989002)
chr8 (87-146)||(3174051-3174110)
chr8 (88-166)||(2978920-2978998)
chr8 (182-330)||(2979942-2980090)
chr8 (208-292)||(3282972-3283056)
chr8 (88-151)||(3142850-3142913)
chr8 (88-151)||(3161804-3161867)
chr8 (88-146)||(13790633-13790691)
chr8 (208-314)||(13790826-13790932)
chr8 (90-146)||(3283187-3283243)
[»] chr6 (1 HSPs)
chr6 (189-330)||(18355258-18355399)
[»] chr1 (2 HSPs)
chr1 (196-330)||(10756111-10756245)
chr1 (88-170)||(10756313-10756395)
[»] chr4 (2 HSPs)
chr4 (196-330)||(8572575-8572709)
chr4 (88-170)||(8572421-8572503)
[»] chr3 (2 HSPs)
chr3 (196-330)||(28698535-28698669)
chr3 (88-170)||(28698381-28698463)


Alignment Details
Target: scaffold0065 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 89 - 388
Target Start/End: Original strand, 44856 - 45173
Alignment:
Q  89 ttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactt------------------tatca 170  Q
    |||||||  ||||| || ||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||                  |||||    
T  44856 ttttgaagaatggctgaacaaatcccatatgctgttgctgctagcctcattaacaggttagttcattttcatcacttcatatatgcgtacatatatatca 44955  T
Q  171 tacacacttggttg-tatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttgga 269  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||    
T  44956 tacacacttagttggtatgctgaatattttcttttg-caggttggcttctgcagcttttcatgagtttggacggattcatggtgttatgcatgagttgga 45054  T
Q  270 aaggcttaagaatactgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaacaactgaatcatggtgtgcaaaactggataagaagactc 369  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||||    
T  45055 aaggcttaagaatactgttgaatccgtcagagctgtgctccttgatgctgaggagaaacaacaacaaagtcatggtgtgcaaaactggataagaagactc 45154  T
Q  370 aaagatgatgtacttcatc 388  Q
    ||||||||||| |||||||    
T  45155 aaagatgatgtgcttcatc 45173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 166 - 388
Target Start/End: Original strand, 50120 - 50342
Alignment:
Q  166 tatcatacacacttggttgtatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagt 265  Q
    |||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||    
T  50120 tatcatacacacttagtaatatgctgaatattttcttttgaccggttggcttctgctgcttttcgtgaatttggacggattcatggtgttatgcacaagt 50219  T
Q  266 tggaaaggcttaagaatactgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaacaactgaatcatggtgtgcaaaactggataagaag 365  Q
    || ||||||||||||||||||||||||| ||| ||||||||||||| |||||||| || |||||| | |  | | ||| ||| |||| ||||||||||||    
T  50220 tgaaaaggcttaagaatactgttgaatccgtctgagctgtgctcctcgatgctgaagagaaacaagagcaaagtaatgctgtacaaatctggataagaag 50319  T
Q  366 actcaaagatgatgtacttcatc 388  Q
    |||||||||||||||||||||||    
T  50320 actcaaagatgatgtacttcatc 50342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 49902 - 49953
Alignment:
Q  19 taccaagagtataccatgcttttcctactctcaaactgatcactctgcaact 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49902 taccaagagtataccatgcttttcctactctcaaactgatcactctgcaact 49953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 50003 - 50076
Alignment:
Q  89 ttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaaca 162  Q
    ||||||||||||||  | ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  50003 ttttgaaagatggctaaacaaatcccatatgctgttgctgctagcctcattaacaggttacttaattttcaaca 50076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 44789 - 44830
Alignment:
Q  34 atgcttttcctactctcaaactgatcactctgcaactttcaa 75  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44789 atgcttttcctactctcaaactgatcactctgcaactttcaa 44830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 201 - 388
Target Start/End: Complemental strand, 3919735 - 3919548
Alignment:
Q  201 ttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgtcaga 300  Q
    |||| |||||||||||||||| || |||||||||||||| |||||| |||||||||||||  |||||||||||||||||| ||| ||| ||||  |||||    
T  3919735 tttttacaggttggcttctgcagcgtttcgtgaatttgggcggatttatggtgttatgcatcagttggaaaggcttaagagtacagttcaatccatcaga 3919636  T
Q  301 gctgtgctccttgatgctgaggacaaacaacaactgaatcatggtgtgcaaaactggataagaagactcaaagatgatgtacttcatc 388  Q
    ||||||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  3919635 gctgtgctccttgatgccgaggagaaacaacaacaaaatcatggtgtgcaaaactggataagaaggctcaaagatgatgtgcttcatc 3919548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 185 - 388
Target Start/End: Complemental strand, 3142765 - 3142562
Alignment:
Q  185 tatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatac 284  Q
    ||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||| | ||  ||||||||||||| || ||    
T  3142765 tatgctggaaattttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacac 3142666  T
Q  285 tgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaacaactgaatcatggtgtgcaaaactggataagaagactcaaagatgatgtactt 384  Q
     ||||||||  ||| ||||||||||||||||||||| ||||||||| |    | ||||| ||| |||| |||||||||||||||||||||||||||||||    
T  3142665 agttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtactt 3142566  T
Q  385 catc 388  Q
    ||||    
T  3142565 catc 3142562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 201 - 376
Target Start/End: Complemental strand, 2911711 - 2911536
Alignment:
Q  201 ttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgtcaga 300  Q
    ||||||||||||||| ||||||||||||||||| |||||| | ||  ||||||||||| | ||||||||||||||||||||||| ||||| ||| |||||    
T  2911711 ttttgacaggttggcatctgcggcctttcgtgagtttggaggaatctatggtgttatgaatgagttggaaaggcttaagaatacagttgagtctatcaga 2911612  T
Q  301 gctgtgctccttgatgctgaggacaaacaacaactgaatcatggtgtgcaaaactggataagaagactcaaagatg 376  Q
      ||| |||||||||||||||||||||||| |||  || |||| |||  |||||||||| ||||||||||||||||    
T  2911611 aatgtactccttgatgctgaggacaaacaagaacaaaaccatgctgtaaaaaactggattagaagactcaaagatg 2911536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 376
Target Start/End: Complemental strand, 2711885 - 2711691
Alignment:
Q  182 ttgtatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaa 281  Q
    |||| |||| |||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| ||||||||||| | || |||||||  || |||||    
T  2711885 ttgtttgctaaatattttctgttcgcaggttggcttctgcggcctttcgtgaacttggacggatttatggtgttatggatgaattggaaatactcaagaa 2711786  T
Q  282 tactgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaacaactgaatcatggtgtgcaaaactggataagaagactcaaagatg 376  Q
     || ||||||||  ||| |||||| |||||||||||||| ||||||||| | |  | ||||| ||| ||||||||| | ||||| ||||||||||    
T  2711785 cacagttgaatccatcaaagctgtcctccttgatgctgaagacaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagatg 2711691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 187 - 330
Target Start/End: Original strand, 3001875 - 3002018
Alignment:
Q  187 tgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactg 286  Q
    ||||||| ||||| ||||   |||||||||||||| ||||||  |||||||||| ||||| ||||||||||| | || ||||||||||||||||| || |    
T  3001875 tgctgaaaattttgttttcgtaggttggcttctgcagcctttgatgaatttggaaggattaatggtgttatggatgaattggaaaggcttaagaacacag 3001974  T
Q  287 ttgaatctgtcagagctgtgctccttgatgctgaggacaaacaa 330  Q
    |||||||  ||| ||||||||||||||||||||| |||||||||    
T  3001975 ttgaatccatcaaagctgtgctccttgatgctgaagacaaacaa 3002018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 376
Target Start/End: Complemental strand, 2916715 - 2916536
Alignment:
Q  197 tttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgt 296  Q
    |||||||| |||| |||||||||| ||||| |||||||||| |||||||  ||||||||| | | ||| | || ||||||  | | || ||||||||  |    
T  2916715 tttctttttacagcttggcttctgaggcctgtcgtgaatttcgacggatatatggtgttaagtatgaggtcgataggcttcgggagacggttgaatccat 2916616  T
Q  297 cagagctgtgctccttgatgctgaggacaaacaacaactgaatcatggtgtgcaaaactggataagaagactcaaagatg 376  Q
    || |||||||||||||||||||||||| |||||| |||  || |||| ||| ||||||||||| ||||||||||| ||||    
T  2916615 caaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatg 2916536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 330
Target Start/End: Complemental strand, 9851680 - 9851554
Alignment:
Q  204 tgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgtcagagct 303  Q
    ||||||||| |  ||||| ||||| |||||||||||||||||  ||||||||||| | || ||||||| ||||||||| || ||||||||| | |||| |    
T  9851680 tgacaggttagggtctgctgccttgcgtgaatttggacggatcaatggtgttatgaatgaattggaaaagcttaagaacacggttgaatctattagagtt 9851581  T
Q  304 gtgctccttgatgctgaggacaaacaa 330  Q
    ||||||||||||||||| || ||||||    
T  9851580 gtgctccttgatgctgaagagaaacaa 9851554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 189 - 330
Target Start/End: Original strand, 2988861 - 2989002
Alignment:
Q  189 ctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgtt 288  Q
    ||||||||||||| || | |||||||||||||| |||||||||||||||||||| ||| ||||||| ||| | || || ||||| ||||| || ||  ||    
T  2988861 ctgaatattttctcttcataggttggcttctgcagcctttcgtgaatttggacgaatttatggtgtcatggatgaattagaaagacttaaaaacacaatt 2988960  T
Q  289 gaatctgtcagagctgtgctccttgatgctgaggacaaacaa 330  Q
    |||    |||||||||| ||||||||||||||||| ||||||    
T  2988961 gaagtcatcagagctgtactccttgatgctgaggagaaacaa 2989002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 3174110 - 3174051
Alignment:
Q  87 atttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggt 146  Q
    |||||||||  ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  3174110 atttttgaagaatggctgagcaaattccatatgctgttgctgcaagtctcattaacaggt 3174051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 2978920 - 2978998
Alignment:
Q  88 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacacttt 166  Q
    |||||||| |||||| || |||||||||||   ||||||| | |||||| ||||||||| |||||||||||||||||||    
T  2978920 tttttgaaggatggctgaacaaattccatacagtgttgctacaagtctcgttaacaggtgacttcattttcaacacttt 2978998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 2979942 - 2980090
Alignment:
Q  182 ttgtatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaa 281  Q
    |||| |||||||||||||||||    |||||||||||||  ||||| || ||||||||||||||| ||  ||| ||| | || || ||||| ||||| ||    
T  2979942 ttgtttgctgaatattttctttacgtaggttggcttctgttgccttacgcgaatttggacggattaataatgtgatggatgaattagaaagacttaaaaa 2980041  T
Q  282 tactgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaa 330  Q
     ||  |||||    |||||||||| ||||||||||||||||| ||||||    
T  2980042 cacaattgaagtcatcagagctgtactccttgatgctgaggagaaacaa 2980090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 3283056 - 3282972
Alignment:
Q  208 aggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaat 292  Q
    |||||||||||||| ||||||||||||  |||||| |||  |||||||||| | ||||| ||||| ||||||||  |||||||||    
T  3283056 aggttggcttctgcagcctttcgtgaacatggacgaatttttggtgttatggatgagttagaaagacttaagaagtctgttgaat 3282972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 3142913 - 3142850
Alignment:
Q  88 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttactt 151  Q
    |||||||| |||||| || |||||||| |||||||||||||| || ||| ||||||||||||||    
T  3142913 tttttgaaggatggctgaacaaattccttatgctgttgctgcaagcctcgttaacaggttactt 3142850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 3161867 - 3161804
Alignment:
Q  88 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttactt 151  Q
    |||||||| |||||| || |||||||| |||||||||||||| || ||| ||||||||||||||    
T  3161867 tttttgaaggatggctgaacaaattccttatgctgttgctgcaagcctcgttaacaggttactt 3161804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 13790633 - 13790691
Alignment:
Q  88 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggt 146  Q
    |||||||| |||||| |||||||||||||||||||||||||  || ||| |||||||||    
T  13790633 tttttgaaggatggctgagcaaattccatatgctgttgctgaaagcctctttaacaggt 13790691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 13790826 - 13790932
Alignment:
Q  208 aggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgtcagagctgtgc 307  Q
    |||||| |||| || |||||||||||| ||||||   ||  |||||||||| | ||||||||||| ||||||||  |||||||||  || |||| |||||    
T  13790826 aggttgacttcggcagcctttcgtgaacttggacaagtttttggtgttatggatgagttggaaagacttaagaactctgttgaatgcgtaagagttgtgc 13790925  T
Q  308 tccttga 314  Q
    |||||||    
T  13790926 tccttga 13790932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 3283243 - 3283187
Alignment:
Q  90 tttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggt 146  Q
    |||||| ||||||||||||||||||||| ||||||||||  || ||| |||||||||    
T  3283243 tttgaaggatggccgagcaaattccatacgctgttgctgaaagcctctttaacaggt 3283187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 330
Target Start/End: Original strand, 18355258 - 18355399
Alignment:
Q  189 ctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgtt 288  Q
    ||||||||||||| || | |||||||||||||| |||||||||||| ||||||| ||| ||||||| ||| | ||  |||||||||||||||| || |||    
T  18355258 ctgaatattttctcttcataggttggcttctgcagcctttcgtgaaattggacgaatttatggtgtcatggatgaactggaaaggcttaagaagacagtt 18355357  T
Q  289 gaatctgtcagagctgtgctccttgatgctgaggacaaacaa 330  Q
    |||||  ||| ||||||||||||||||||||| |||||||||    
T  18355358 gaatccatcaaagctgtgctccttgatgctgaagacaaacaa 18355399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 330
Target Start/End: Complemental strand, 10756245 - 10756111
Alignment:
Q  196 ttttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctg 295  Q
    ||||||||| | |||||||||||||  ||||| |||||||||||||||||| ||  ||| |   | || || ||||| |||| ||| || ||||||||      
T  10756245 ttttcttttcataggttggcttctgttgccttacgtgaatttggacggattaataatgtgaaagatgaattagaaagccttacgaagacagttgaatcca 10756146  T
Q  296 tcagagctgtgctccttgatgctgaggacaaacaa 330  Q
    |||||||||||||||||||||||||| ||||||||    
T  10756145 tcagagctgtgctccttgatgctgagaacaaacaa 10756111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 10756395 - 10756313
Alignment:
Q  88 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactttatca 170  Q
    ||||||||||||||| || ||||||||||| | |||||||   || ||||||||| ||||| |||||||||||| ||||||||    
T  10756395 tttttgaaagatggctgaacaaattccatacggtgttgctcaaagcctcattaacgggttaattcattttcaaccctttatca 10756313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 330
Target Start/End: Original strand, 8572575 - 8572709
Alignment:
Q  196 ttttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctg 295  Q
    ||||||||| | |||||||||||||  ||||| |||||||||||| ||||| ||  ||| |   | || || ||||| |||| ||| || ||||||||      
T  8572575 ttttcttttcataggttggcttctgttgccttacgtgaatttggaaggattaataatgtgaaagatgaattagaaagtcttacgaagacagttgaatcca 8572674  T
Q  296 tcagagctgtgctccttgatgctgaggacaaacaa 330  Q
    ||||||||| |||||||||||||||| ||||||||    
T  8572675 tcagagctgcgctccttgatgctgagaacaaacaa 8572709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 8572421 - 8572503
Alignment:
Q  88 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactttatca 170  Q
    |||||||| |||||| || ||||||||| | | |||||||   || ||||||||| ||||| |||||||||||| ||||||||    
T  8572421 tttttgaaggatggctgaacaaattccacacggtgttgctcaaagcctcattaacgggttaattcattttcaaccctttatca 8572503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 330
Target Start/End: Original strand, 28698535 - 28698669
Alignment:
Q  196 ttttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctg 295  Q
    ||||||||| | |||||||||||||  ||||| |||||||||||| ||||| ||  ||| |   | || || ||||| |||| ||| || ||||||||      
T  28698535 ttttcttttcataggttggcttctgttgccttacgtgaatttggaaggattaataatgtgaaagatgaattagaaagtcttacgaagacagttgaatcca 28698634  T
Q  296 tcagagctgtgctccttgatgctgaggacaaacaa 330  Q
    ||||||||| |||||||||||||||| ||||||||    
T  28698635 tcagagctgcgctccttgatgctgagaacaaacaa 28698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 28698381 - 28698463
Alignment:
Q  88 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactttatca 170  Q
    |||||||| |||||| || ||||||||| | | |||||||   || ||||||||| ||||| |||||||||||| ||||||||    
T  28698381 tttttgaaggatggctgaacaaattccacacggtgttgctcaaagcctcattaacgggttaattcattttcaaccctttatca 28698463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University