View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8409_low_8 (Length: 368)
Name: NF8409_low_8
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 1680499 - 1680156
Alignment:
| Q |
19 |
aagatattgtacaagcacctataaatgcatatattggccaatatctcatggagttgtatattggaactccaccaataaaaatatcaggtaccgtagacac |
118 |
Q |
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| T |
1680499 |
aagatattgtacaagcacctataaatgcatatattggccaatatctcatggagttgtatattggaactccaccaataaaaatatcaggtaccgtagacac |
1680400 |
T |
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| Q |
119 |
gggaagtgacctgatatgggtccaatgtgtaccttgtttagggtgctacaaccaaataaaccctatgtttgatcctctaaaatcttcaacatacactaat |
218 |
Q |
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| T |
1680399 |
gggaagtgacctgatatgggtccaatgtgtaccttgtttagggtgctacaaccaaataaaccctatgtttgatcctctaaaatcttcaacatacactaat |
1680300 |
T |
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| Q |
219 |
atctcatgtgattctccactgtgctacaaaccttacataggtgagtgttctcctgagaagcggtgcgattacacctatggctatgcagatggttctctaa |
318 |
Q |
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| T |
1680299 |
atctcatgtgattctccattgtgctacaaaccttacataggtgagtgttctcctgagaaacggtgcgattacacctatggctatgcagatagttctctaa |
1680200 |
T |
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| Q |
319 |
ccaagggtgttcttgcacaagaaacagttaccttaacaccaaac |
362 |
Q |
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| T |
1680199 |
ccaagggtgttcttgcacaagaaacagttaccttaacatcaaac |
1680156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 1668960 - 1668620
Alignment:
| Q |
22 |
atattgtacaagcacctataaatgcatatattggccaatatctcatggagttgtatattggaactccaccaataaaaatatcaggtaccgtagacacggg |
121 |
Q |
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| T |
1668960 |
atattgtacaagcacctataaatgcctatattggccaacatctcatggaaatatatattggaactccaccaataaaaataacaggccttgtagacacagg |
1668861 |
T |
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| Q |
122 |
aagtgacctgatatgggtccaatgtgtaccttgtttagggtgctacaaccaaataaaccctatgtttgatcctctaaaatcttcaacatacactaatatc |
221 |
Q |
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| T |
1668860 |
aagtgatcttatatggatccaatgtgcaccttgtttaggttgctacaaacaaataaaacccatgtttgatcctctaaaatcatccacttacaataacatc |
1668761 |
T |
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| Q |
222 |
tcatgtgattctccactgtgctacaaaccttacataggtgagtgttctcctgagaagcggtgcgattacacctatggctatgcagatggttctctaacca |
321 |
Q |
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| T |
1668760 |
tcatgtgattctcctttgtgtcacaaacttgacacaggtgtgtgttctcctgagaagcgttgcaattatacctatggctacggagataattctctaacaa |
1668661 |
T |
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| Q |
322 |
agggtgttcttgcacaagaaacagttaccttaacaccaaac |
362 |
Q |
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| T |
1668660 |
agggtgttcttgcacaagacacggctacctttacatcaaac |
1668620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 362
Target Start/End: Complemental strand, 1661499 - 1661358
Alignment:
| Q |
221 |
ctcatgtgattctccactgtgctacaaaccttacataggtgagtgttctcctgagaagcggtgcgattacacctatggctatgcagatggttctctaacc |
320 |
Q |
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||||||||||||||| |||| |||||| | ||| ||||| |||||||||||||||||| ||| |||| ||||||||||| | |||| ||||||||| |
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| T |
1661499 |
ctcatgtgattctcctttgtgtcacaaacttgacacaggtgtgtgttctcctgagaagcgttgcaattatacctatggctacggagataattctctaaca |
1661400 |
T |
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| Q |
321 |
aagggtgttcttgcacaagaaacagttaccttaacaccaaac |
362 |
Q |
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| T |
1661399 |
aagggtgttcttgcacaagacacggctacctttacatcaaac |
1661358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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