View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8409_low_9 (Length: 367)
Name: NF8409_low_9
Description: NF8409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8409_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 157 - 355
Target Start/End: Original strand, 42374522 - 42374721
Alignment:
| Q |
157 |
ttctaatctttatttgactaatttggatggtgtttggattctctaatatagctgcatagtgcataagctgtaggaaccatta-gatctaaagagagaagt |
255 |
Q |
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| T |
42374522 |
ttctaatctttatttgactaatttggatggtgtttggattctctaatatagctgcatagtgcataagctgtaggaaccattaagatctaaagagagaagt |
42374621 |
T |
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| Q |
256 |
tttctctcactaaatctaactacaaaggataagttgtagctaaacccaaaagaagattaaacataagctgattattttccttttgtgatggaacaaagtg |
355 |
Q |
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| T |
42374622 |
tttctctcactaaatctaactacaaaggataagttgttgctaaacccaaaagaagattaaacataagctgattattttccttttgtgatggaacaaagtg |
42374721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 42374388 - 42374501
Alignment:
| Q |
14 |
tggacatcctttcacatgtaatcaactgcttggagaatttctcataggattcctcttagattccattgtctatgccttcaatcaacggctttatttctct |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42374388 |
tggatatcctttcacatgtaatcaactgcttggagaatttctcataggattcctcttagattccattgtctatgccttcaatcaacggctttatttctct |
42374487 |
T |
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| Q |
114 |
ttcactaaagcaga |
127 |
Q |
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| T |
42374488 |
ttcactaaagcaga |
42374501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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