View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8410_high_3 (Length: 220)

Name: NF8410_high_3
Description: NF8410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8410_high_3
NF8410_high_3
[»] chr4 (4 HSPs)
chr4 (1-217)||(54396584-54396800)
chr4 (5-216)||(23587525-23587736)
chr4 (5-216)||(23596377-23596588)
chr4 (142-216)||(35132750-35132824)
[»] chr7 (16 HSPs)
chr7 (89-216)||(8102916-8103043)
chr7 (68-216)||(39985874-39986022)
chr7 (146-216)||(7877525-7877595)
chr7 (95-216)||(8602229-8602350)
chr7 (96-216)||(8590894-8591014)
chr7 (142-213)||(17260543-17260614)
chr7 (142-216)||(10494166-10494240)
chr7 (146-207)||(8382677-8382738)
chr7 (170-213)||(6789842-6789885)
chr7 (142-216)||(3147574-3147648)
chr7 (147-217)||(8017204-8017274)
chr7 (83-213)||(8585501-8585631)
chr7 (146-216)||(8636135-8636205)
chr7 (142-216)||(13333248-13333322)
chr7 (173-213)||(1301797-1301837)
chr7 (173-217)||(8659696-8659740)
[»] chr2 (6 HSPs)
chr2 (80-216)||(17716485-17716621)
chr2 (5-138)||(5445621-5445754)
chr2 (147-216)||(12234996-12235065)
chr2 (149-216)||(12245198-12245265)
chr2 (170-214)||(7542556-7542600)
chr2 (146-216)||(16657309-16657379)
[»] chr1 (1 HSPs)
chr1 (146-217)||(4678349-4678420)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 54396584 - 54396800
Alignment:
Q  1 aagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396584 aagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagca 54396683  T
Q  101 gcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396684 gcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacag 54396783  T
Q  201 taacaacagcattcttc 217  Q
    |||||||||||||||||    
T  54396784 taacaacagcattcttc 54396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 23587736 - 23587525
Alignment:
Q  5 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 104  Q
    |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||| | |||||||||||| |||||||| |    
T  23587736 gaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcagcgg 23587637  T
Q  105 taggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaac 204  Q
    |||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||    
T  23587636 taggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttac 23587537  T
Q  205 aacagcattctt 216  Q
    ||| ||||||||    
T  23587536 aacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 23596588 - 23596377
Alignment:
Q  5 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 104  Q
    |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||| | |||||||||||| || |||||||    
T  23596588 gaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcggcagcag 23596489  T
Q  105 taggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaac 204  Q
    | ||||| |||||||| |||| |||||| |  || |||||  |||||||||| || |||||||||||||| ||||| ||||| || ||||| || || ||    
T  23596488 tgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttac 23596389  T
Q  205 aacagcattctt 216  Q
    ||| ||||||||    
T  23596388 aacggcattctt 23596377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 35132750 - 35132824
Alignment:
Q  142 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 8102916 - 8103043
Alignment:
Q  89 gcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaat 188  Q
    ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |  ||| ||||||||||||| || |||||||| |||||||||||||| |    
T  8102916 gcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagt 8103015  T
Q  189 aagcaggaacagtaacaacagcattctt 216  Q
    ||||||| ||||| || || ||||||||    
T  8103016 aagcagggacagtgacgacggcattctt 8103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 39985874 - 39986022
Alignment:
Q  68 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 167  Q
    |||||||| || | |||||||||||| ||||||||||| |||||||| ||||| | ||  ||||| | ||| | |||| | |||||||| || |||||||    
T  39985874 gctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagctt 39985973  T
Q  168 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    |||| || || ||||| || |||||||| ||||||||||||||||||||    
T  39985974 gacgctgggagtcattaaagtaagcagggacagtaacaacagcattctt 39986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 7877595 - 7877525
Alignment:
Q  146 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 8602229 - 8602350
Alignment:
Q  95 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 194  Q
    ||||| ||||| |||||||| || |||| ||  ||||| | ||| | ||| |||||||||||||| || ||||  || ||||||||||| |||||||| |    
T  8602229 gcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccg 8602328  T
Q  195 gaacagtaacaacagcattctt 216  Q
    | ||||||||||| ||||||||    
T  8602329 gcacagtaacaactgcattctt 8602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 8590894 - 8591014
Alignment:
Q  96 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 195  Q
    |||| ||||| || |||||||| |||| ||  |||||||| || | |||  ||||||||||||| |||||||  |  ||||||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  196 aacagtaacaacagcattctt 216  Q
     ||||||||||| ||||||||    
T  8590994 cacagtaacaactgcattctt 8591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  142 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 213  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 10494240 - 10494166
Alignment:
Q  142 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattctt 10494166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  146 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 207  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  170 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 213  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 3147574 - 3147648
Alignment:
Q  142 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 8017274 - 8017204
Alignment:
Q  147 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 217  Q
    |||| ||||| || || |||||||| || ||||||||||| ||||| ||||| |||||||| |||||||||    
T  8017274 caccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttc 8017204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 8585631 - 8585501
Alignment:
Q  83 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 182  Q
    ||||| ||||| || |||||||| || ||||| || |||||||  ||||| |  || | ||| |||||||||||  | || ||||  || ||||||||||    
T  8585631 ccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcat 8585532  T
Q  183 tgaaataagcaggaacagtaacaacagcatt 213  Q
    ||||||||||||| ||||| ||||| |||||    
T  8585531 tgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 8636205 - 8636135
Alignment:
Q  146 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || ||||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 13333322 - 13333248
Alignment:
Q  142 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| ||||||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattctt 13333248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 1301797 - 1301837
Alignment:
Q  173 tgagaatcattgaaataagcaggaacagtaacaacagcatt 213  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatt 1301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 8659696 - 8659740
Alignment:
Q  173 tgagaatcattgaaataagcaggaacagtaacaacagcattcttc 217  Q
    |||||||||||||| || ||||| || ||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttc 8659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 17716621 - 17716485
Alignment:
Q  80 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaat 179  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||  || |||||||| |  ||||||     
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaa 17716522  T
Q  180 cattgaaataagcaggaacagtaacaacagcattctt 216  Q
     ||| || |||||||| ||||||||||| ||||||||    
T  17716521 aattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 5445754 - 5445621
Alignment:
Q  5 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 104  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  105 taggctcattaataatcctcaacacattcaaacc 138  Q
    ||||||| || || ||||||| |||||| |||||    
T  5445654 taggctcgttgatgatcctcatcacattaaaacc 5445621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 12234996 - 12235065
Alignment:
Q  147 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| ||||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  149 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 7542556 - 7542600
Alignment:
Q  170 cgttgagaatcattgaaataagcaggaacagtaacaacagcattc 214  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattc 7542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 16657379 - 16657309
Alignment:
Q  146 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 216  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 4678420 - 4678349
Alignment:
Q  146 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 217  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttc 4678349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University