View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8410_low_1 (Length: 480)
Name: NF8410_low_1
Description: NF8410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8410_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 35343739 - 35344175
Alignment:
| Q |
16 |
gacatcaacctttctcccataggattttcttttgatcttctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagtaactcgcagtgtgcttcc |
115 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35343739 |
gacatcaacctttctcccataggattttctcttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagtaactcgcagtgtgcttcc |
35343838 |
T |
|
| Q |
116 |
tcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattctctggtttaaggtctcgatgaacgacgccttgagagtgta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35343839 |
tcacaagcaatgccaaaatcagcaattttaaggtgaaagtcatcattaataaggacattctctggtttaaggtctcgatgaacgacgccttgagagtgta |
35343938 |
T |
|
| Q |
216 |
tatattccattccacgagcaatatccaaagaaaaagcaattagtttctgcagagaaattgtttttccctccaatttgtgcaaataattcctcaatgaacc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
35343939 |
tatattccattccacgagcaatatccaaagaaaaagcaattagtttctgtagagaaatcgtttttccctccaacttgtgcaaataactcctcaacgaacc |
35344038 |
T |
|
| Q |
316 |
ttccgatagatactctgtgataacacaataaacaggtgggtttctgcatgctgctaccaactgcacaatcagatcannnnnnnnnnnnnnnngagaaatc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35344039 |
ttccgatagatactctgtgataacacaataaacaggtgggtttctgcatgctgctaccaactgcacaatcagatca--atatatatatatatgagaaatc |
35344136 |
T |
|
| Q |
416 |
atgtataaaacaccttccttgtaataataaatttctcta |
454 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
35344137 |
atgtataaaacaccttccttgtaatactaaatttctcta |
35344175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 35362217 - 35361781
Alignment:
| Q |
16 |
gacatcaacctttctcccataggattttcttttgatcttctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagtaactcgcagtgtgcttcc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35362217 |
gacatcaacctttctcccataggattttctcttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagtaactcgcagtgtgcttcc |
35362118 |
T |
|
| Q |
116 |
tcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattctctggtttaaggtctcgatgaacgacgccttgagagtgta |
215 |
Q |
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| T |
35362117 |
tcacaagcaatgccaaaatcagcaattttaaggtgaaagtcatcattaataaggacattctctggtttaaggtctcgatgaacgacgccttgagagtgta |
35362018 |
T |
|
| Q |
216 |
tatattccattccacgagcaatatccaaagaaaaagcaattagtttctgcagagaaattgtttttccctccaatttgtgcaaataattcctcaatgaacc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
35362017 |
tatattccattccacgagcaatatccaaagaaaaagcaattagtttctgtagagaaatcgtttttccctccaacttgtgcaaataactcctcaacgaacc |
35361918 |
T |
|
| Q |
316 |
ttccgatagatactctgtgataacacaataaacaggtgggtttctgcatgctgctaccaactgcacaatcagatcannnnnnnnnnnnnnnngagaaatc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35361917 |
ttccgatagatactctgtgataacacaataaacaggtgggtttctgcatgctgctaccaactgcacaatcagatca--atatatatatatatgagaaatc |
35361820 |
T |
|
| Q |
416 |
atgtataaaacaccttccttgtaataataaatttctcta |
454 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
35361819 |
atgtataaaacaccttccttgtaatactaaatttctcta |
35361781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 35355569 - 35355194
Alignment:
| Q |
16 |
gacatcaacctttctcccataggattttcttttgatcttctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagtaactcgcagtgtgcttcc |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||| | |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||||| |
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| T |
35355569 |
gacatcaacctttctcccataggactttcgtctgatcatttcaggtgccatccaacggtaagtaccagggtcatcagcaagtaagtcgcagtatgcttcc |
35355470 |
T |
|
| Q |
116 |
tcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattctctggtttaaggtctcgatgaacgacgccttgagagtgta |
215 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||| |||| |||||||| || |||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
35355469 |
tcacaggcaatgccaaaatcagcaattttaagatgagagtccccattaatgagaacattctctggtttaaggtctcgatgaatgacaccttgagagtgta |
35355370 |
T |
|
| Q |
216 |
tatattccattccacgagcaatatccaaagaaaaagcaattagtttctgcagagaaattgtttttccctccaatttgtgcaaataattcctcaatgaacc |
315 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||| |||| |||||||| || |||||||| |||||||||||| |
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| T |
35355369 |
tatattccattccacgagcaatatccagagaaaaagcaattagcttctgtaaagaaatgattttcccctccaacttatgcaaatatgccctcaatgaacc |
35355270 |
T |
|
| Q |
316 |
ttccgatagatactctgtgataacacaataaacaggtgggtttctgcatgctgctaccaactgcacaatcagatca |
391 |
Q |
| |
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||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
35355269 |
ttctaatagatattctgtgataacacagtaaacaggtggctttctgcatgctgctacgaactgcacaatcagatca |
35355194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 35358184 - 35358103
Alignment:
| Q |
304 |
cctcaatgaaccttccgatagatactctgtgataacacaataaacaggtgggtttctgcatgctgctaccaactgcacaatc |
385 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||| |
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| T |
35358184 |
cctcaacgaaccttccgatagatactctgtgataacacaataaacatatgcttttctgcatgctgctacaaactgcgcaatc |
35358103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 35358088 - 35358034
Alignment:
| Q |
408 |
gagaaatcatgtataaaacaccttccttgtaataataaatttctctacatgatgt |
462 |
Q |
| |
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|||||||| | |||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
35358088 |
gagaaatcgtttataaaacaccttctttgtaatagtaaatttccctacatgatgt |
35358034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 371
Target Start/End: Complemental strand, 3820332 - 3819981
Alignment:
| Q |
20 |
tcaacctttctcccataggattttcttttgatcttctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagtaactcgcagtgtgcttcctcac |
119 |
Q |
| |
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||||||||||||||||| ||||| | ||||||| | ||||||||||||||||||||||| ||| | || || || | ||| || || ||| ||||||| |
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| T |
3820332 |
tcaacctttctcccatatgatttccgtttgatcatttcaggtgccatccaacggtaggtgccaggatcatctgccaataagtcacatactgcctcctcac |
3820233 |
T |
|
| Q |
120 |
aagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattctctggtttaaggtctcgatgaacgacgccttgagagtgtatata |
219 |
Q |
| |
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|||||||||| |||||||||| ||||||| ||||||| ||| ||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
3820232 |
aagcaatgccgaaatcagcaagtttaaggcgaaagtcttcatcaatgaggacattctctggtttaaggtctctatgaatgacaccttgagagtgtatata |
3820133 |
T |
|
| Q |
220 |
ttccattccacgagcaatatccaaagaaaaagcaattagtttctgcagagaaattgtttttccctccaatttgtgcaaataattcctcaatgaaccttcc |
319 |
Q |
| |
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| |||||||||||| |||||| | || |||||| |||| ||||| |||| ||| | ||| |||||| || |||||||| ||||| |||||||| |
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| T |
3820132 |
tgccattccacgagaaatatcaagagcaaaagctattaacttctgtagaggaatagctttgtgctccaacttatgcaaatatgctctcaaggaaccttca |
3820033 |
T |
|
| Q |
320 |
gatagatactctgtgataacacaataaacaggtgggtttctgcatgctgcta |
371 |
Q |
| |
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|||||||| |||||||||| ||||||||| ||||| ||||||| ||| |||| |
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|
| T |
3820032 |
gatagatattctgtgataatacaataaaccggtggatttctgcttgcagcta |
3819981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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