View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8410_low_2 (Length: 415)
Name: NF8410_low_2
Description: NF8410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8410_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 45082012 - 45081617
Alignment:
| Q |
1 |
attttcttccataaggatatagtatatataaggaatttaagttttgaaaagtaatgaataataccactattttactgatccattttatatgaactccatt |
100 |
Q |
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| T |
45082012 |
attttcttccataaggatatagtatat----ggaatctaagttttgaaaagtaatgaataataccactattttactgatccattttatatgcacgccatt |
45081917 |
T |
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| Q |
101 |
aattcatttcaggatttgcaagcataactcaactttatagtccataaatgtcagtttactaagggagaagttaaaacggacccttgtttgttggtcagta |
200 |
Q |
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| T |
45081916 |
ggttcatttcaggatttgcaagcataactcaactttatagtccataaatgtcagtttactaagggagaagttaaaacggacccttgtttgttggtcagtg |
45081817 |
T |
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| Q |
201 |
tacacgtttagttttctttctttattttttcatttatagttcctaaatacataatgaacacttgaagacttaatttagtggagtattacttctcgtaagt |
300 |
Q |
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| T |
45081816 |
tacacgtttagttttctttctttattttttcatttatagttcctaaatacataatgaacacttgaagacttaatttagtggagtattacttctcgtaagt |
45081717 |
T |
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| Q |
301 |
aaattgagtcaatatttttgtagggtgttttgttatatactttgttctcttaaacctttaatggttattgttattgcacaaggactaagccggagacaac |
400 |
Q |
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| T |
45081716 |
aaattgagtcaatatttttgtagggtgttttcttatatactttgttctcttaaacctttaatggttattgttattgcacaaggactaagcccgaaacaac |
45081617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 12697902 - 12697824
Alignment:
| Q |
76 |
tgatccattttatatgaactccattaattcatttcaggatttgcaagcataactcaactttatagtccataaatgtcag |
154 |
Q |
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| T |
12697902 |
tgatccattatatatacactccttgaattcatttcaggatatgctagtataattcaactttatagtccataaatgtcag |
12697824 |
T |
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