View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8410_low_5 (Length: 280)
Name: NF8410_low_5
Description: NF8410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8410_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 22334720 - 22334797
Alignment:
| Q |
78 |
gaatggtgattttataattggtttgtggtggtcggagttaattaaatcttagagagaagtcggttggtgttgtttgat |
155 |
Q |
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| T |
22334720 |
gaatggtgattttataattggtttgtggtggtcggagttaattaaatcttagagagaagtcggttggtgttgtttgat |
22334797 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 22326464 - 22326540
Alignment:
| Q |
5 |
caattatattagcaacctggtttacgagagtgatgtgcccgccgtgctgctgtaagggagattggaaggataagaat |
81 |
Q |
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| T |
22326464 |
caattatattggcaacctggtgaacgagagggctgcggccgccgtgatgctgtaagggagattggaaggataagaat |
22326540 |
T |
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