View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8410_low_6 (Length: 276)
Name: NF8410_low_6
Description: NF8410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8410_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 32853933 - 32854181
Alignment:
| Q |
17 |
gagttggaactccggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaaccca |
116 |
Q |
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| T |
32853933 |
gagttggaactccggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaaccca |
32854032 |
T |
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| Q |
117 |
tcaattcatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaac |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32854033 |
tcagttcatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaac |
32854132 |
T |
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| Q |
217 |
cactttcctttctggaacttgttctccacaacttttaatttgatgtcca |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32854133 |
cactttcctttctggaacttgttctccacaacttttaatttgatttcca |
32854181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 37177068 - 37177316
Alignment:
| Q |
17 |
gagttggaactccggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaaccca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177068 |
gagttggaactccggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaaccca |
37177167 |
T |
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| Q |
117 |
tcaattcatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaac |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177168 |
tcaatttatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaac |
37177267 |
T |
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| Q |
217 |
cactttcctttctggaacttgttctccacaacttttaatttgatgtcca |
265 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
37177268 |
cactttcttttctggaacttgttctccacaacttttaatttgatttcca |
37177316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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