View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8410_low_7 (Length: 259)
Name: NF8410_low_7
Description: NF8410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8410_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 20171121 - 20170978
Alignment:
| Q |
91 |
cgaggtgtaatggtttatataggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20171121 |
cgaggtgtaatggtttatataggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttg |
20171022 |
T |
|
| Q |
191 |
catgtgttctgtttctccaagatgggtttctctccttgtctctc |
234 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20171021 |
catgtgctctgtttctccaagatgggtttctctccttgtctctc |
20170978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 44392831 - 44392688
Alignment:
| Q |
91 |
cgaggtgtaatggtttatataggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttg |
190 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392831 |
cgaggtgtaatggtttatataggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttg |
44392732 |
T |
|
| Q |
191 |
catgtgttctgtttctccaagatgggtttctctccttgtctctc |
234 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44392731 |
catgtgctctgtttctccaagatgggtttctctccttgtctctc |
44392688 |
T |
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