View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8411_low_2 (Length: 499)
Name: NF8411_low_2
Description: NF8411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8411_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 39754489 - 39754007
Alignment:
| Q |
1 |
tttgctttattaggggaattgatcccctctatatatttcttcctcaatctcaacccttggtttttcactctctctatttcattataaactatatttctct |
100 |
Q |
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| T |
39754489 |
tttgctctattaggggaattgatcccctctatatatttcttcctcaatctcaacccttggtttttcactctctctatttcattataaactatctttctct |
39754390 |
T |
|
| Q |
101 |
ttccattttattttaataaaaaatggatatttaaatggacttctttttgttgtatgagaggacttaaacccataaatttgtaggatttggattctttgtt |
200 |
Q |
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| T |
39754389 |
ttccattttattttaataaaaaatggatatttaaatggacttctttttgttgtatgagaggacttaaacccataaatttataggatttggattctttgtt |
39754290 |
T |
|
| Q |
201 |
ataaatacgtgacacaattacattttgggttgtcttatcttaaactaatggtcgaaattgtttaaaattaatttattgacattataatttgaattgttta |
300 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39754289 |
gtaactacgtgacacaattacattttgggtcgtcttatcttaaactaatggtcgaaattgtttaaaattaatttattgacagtataatttgaattgttta |
39754190 |
T |
|
| Q |
301 |
atcttaaatgaacgatcgagatcacctacaacgtctaaatgcttgagcatgcttctacaaactatccaattccaaatttggaaattctttttgatgacta |
400 |
Q |
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||||||||| |||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39754189 |
atcttaaataaacggtcgagatcacctacaacacctaaatgcttgagaatgcttctacaaactatccaattccaaatttggaaattctttttgatgacta |
39754090 |
T |
|
| Q |
401 |
tgataggatgtttccaaatttattaggtgttagtttcatgtaatggattgaatatattaaaactcattttacatatgaatagt |
483 |
Q |
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| T |
39754089 |
tgataggatgtttccaaatttattaggtgttagtttcatgtaatggattgaatatattaaaactcattttacatatgaatagt |
39754007 |
T |
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