View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8411_low_3 (Length: 249)
Name: NF8411_low_3
Description: NF8411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8411_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 41954771 - 41954555
Alignment:
| Q |
17 |
gcatcctcctttcccctcaattatctcttcatcctttaccagaacctttctcactcgccagagatcttctttctcaaccacgagccgccgccaagctttc |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41954771 |
gcatcttcctttcccctcaattatctcttcatcctttaccagaacctttctcactcaccagagatcttctttctcaaccacgagccgccgccaagctttc |
41954672 |
T |
|
| Q |
117 |
ccttacgtcgatgcgaccaccacccgagccaccaccacaaaacaatcaaatagttgtcac-aggttctccctcatctcaaatccgaaaacgatgtttcaa |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||| |
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| T |
41954671 |
tcttccgtcgatgcgaccaccacccgagccaccaccacaaaacaatcaaacagttgtcacaattttctccctcatcttaaatccgaaaacgatgtttcaa |
41954572 |
T |
|
| Q |
216 |
gctctccccctcatggt |
232 |
Q |
| |
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||||||||||||||||| |
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| T |
41954571 |
gctctccccctcatggt |
41954555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 35706700 - 35706907
Alignment:
| Q |
21 |
cctcctttcccctcaattatctcttcatcctttaccagaacctttctcactcgccagagatcttctttctcaaccacgagccgccgccaagctttccctt |
120 |
Q |
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|||||||||||||||| ||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
35706700 |
cctcctttcccctcaactatctcttcattcttttccagaatctttctcactcaccagagatcttctttctcaaccacgagccaccgccaagctttccttt |
35706799 |
T |
|
| Q |
121 |
acgtcgatgcgaccaccacccgagccaccaccacaaaacaatcaaatagttgtcac-aggttctccctcatctcaaatccgaaaacgatgtttcaagctc |
219 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||| |||||||||||||||||| ||||||||||||| |
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| T |
35706800 |
ctaccgatgcgaccaccacccgagccaccaccacaaaacaatcaaatggctgtcacgattgtctcccccatctcaaatccgaaaacaatgtttcaagctc |
35706899 |
T |
|
| Q |
220 |
tccccctc |
227 |
Q |
| |
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|| ||||| |
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| T |
35706900 |
tctccctc |
35706907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 11789464 - 11789249
Alignment:
| Q |
17 |
gcatcctcctttcccctcaattatctcttcatcctttaccagaacctttctcactcgccagagatcttctttctcaaccacgagccgccgccaagctttc |
116 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||| ||||||| ||| | || || || |||||||||||||| |
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| T |
11789464 |
gcatcctcctttcccctcaactatctcttcatccttttccattttctttctcactcaccaaagatctttcttccccactaccaggtgccgccaagctttc |
11789365 |
T |
|
| Q |
117 |
ccttacgtcgatgcgaccaccacccgagccaccaccacaaaacaatcaaatagttgtcacaggt-tctccctcatctcaaatccgaaaacgatgtttcaa |
215 |
Q |
| |
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| | || ||||||||||||||||||||||||||| ||||||||||||||| |||||||| | |||||| |||| ||||||||||||| || |||||| |
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| T |
11789364 |
cttcccgccgatgcgaccaccacccgagccaccacaacaaaacaatcaaatggttgtcacgtttgtctcccccatcccaaatccgaaaacaatatttcaa |
11789265 |
T |
|
| Q |
216 |
gctctccccctcatgg |
231 |
Q |
| |
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|||||| ||||||||| |
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|
| T |
11789264 |
gctctctccctcatgg |
11789249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 7202748 - 7202536
Alignment:
| Q |
17 |
gcatcctcctttcccctcaattatctcttcatcctttaccagaacctttctcactcgccagagatcttctttctcaaccacgagccgccgccaagctttc |
116 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||||| ||||| ||||||||||| | | |||||||||||| |||||||| || ||| || | ||| |
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| T |
7202748 |
gcatcatcctttcccctcaactatctctacatccttttccagatcctttctcacttac---atatcttctttctctaccacgagtcgtcgcgaaaccttc |
7202652 |
T |
|
| Q |
117 |
ccttacgtcgatgcgaccaccacccgagccaccaccacaaaacaatcaaatagttgtcacaggt-tctccctcatctcaaatccgaaaacgatgtttcaa |
215 |
Q |
| |
|
| || || |||||||||| | ||||||||||||||||||||||||||||| | |||||| | | |||||| |||||||||||||||||| |||||||| |
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| T |
7202651 |
cttttcgccgatgcgaccgtcccccgagccaccaccacaaaacaatcaaatggctgtcacggttgtctcccccatctcaaatccgaaaacagtgtttcaa |
7202552 |
T |
|
| Q |
216 |
gctctccccctcatgg |
231 |
Q |
| |
|
|||||| ||||||||| |
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| T |
7202551 |
gctctctccctcatgg |
7202536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 7207820 - 7207731
Alignment:
| Q |
143 |
agccaccaccacaaaacaatcaaatagttgtcacaggt-tctccctcatctcaaatccgaaaacgatgtttcaagctctccccctcatgg |
231 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| | | |||||| ||||||||||| |||||| ||||| |||||||| ||||||||| |
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| T |
7207820 |
agccaccaccacaaaacaatcaaatggctgtcacggttgtctcccccatctcaaatctgaaaacagtgttttaagctctctccctcatgg |
7207731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 36136784 - 36136923
Alignment:
| Q |
19 |
atcctcctttcccctcaattatctcttcatcctttaccagaacctttctcactcgccagagatcttctttctcaaccacgagccgccgccaagctttccc |
118 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| || || |||| |||| | |||||||||| ||||||| |||| ||| | | ||||||| ||| | |
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| T |
36136784 |
atcctccttttccctcaactatctcttcatcctttttcataatctttttcacacaccagagatctcctttctccaccatgagtcactgccaagccttctc |
36136883 |
T |
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| Q |
119 |
ttacgtcgatgcgaccaccacccgagccaccaccacaaaa |
158 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||||| |
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| T |
36136884 |
ttccgccgatgcgaccaccacccgagccaccaccacaaaa |
36136923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 30401963 - 30401757
Alignment:
| Q |
17 |
gcatcctcctttcccctcaattatctcttcatcctttaccagaacctttctcactcgccagagatcttctttctcaaccacgagccgccgccaagctttc |
116 |
Q |
| |
|
||||| || ||||| |||| |||||||||||||||| | |||| |||||||||| || ||||| ||||||| |||||||||||||| ||| ||| |
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| T |
30401963 |
gcatcgtcatttccactcatctatctcttcatccttttctagaatttttctcactcaccgatgatctcctttctccgccacgagccgccgctaagtcttc |
30401864 |
T |
|
| Q |
117 |
ccttacgtcgatgcgaccaccacccgagccaccaccacaaaacaatcaaatagttgtcacaggttctccctcatctcaaatccgaaaacgatgtttcaag |
216 |
Q |
| |
|
| || || | ||| |||||||||||||||||||||||||||||||| |||| |||| |||||| |||||||||| ||| ||| ||||||||| |
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| T |
30401863 |
ctttccgcctatgtgaccaccacccgagccaccaccacaaaacaatgaaatggttg--------tctcccccatctcaaattcgagaacagtgtttcaag |
30401772 |
T |
|
| Q |
217 |
ctctccccctcatgg |
231 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
30401771 |
ctctctccctcatgg |
30401757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 2545340 - 2545476
Alignment:
| Q |
17 |
gcatcctcctttcccctcaattatctcttcatcctttaccagaacctttctcactcgccagagatcttctttctcaaccacgagccgccgccaagctttc |
116 |
Q |
| |
|
||||| || |||||||||| |||||||||||||||| | |||| |||||||||| ||| ||||| ||||||| ||||||||||| ||| ||| ||| |
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| T |
2545340 |
gcatcttcatttcccctcatctatctcttcatccttttctagaatttttctcactcaccaatgatctcctttctccaccacgagccgtcgctaagtcttc |
2545439 |
T |
|
| Q |
117 |
ccttacgtcgatgcgaccaccacccgagccaccacca |
153 |
Q |
| |
|
| || || | ||||||||||||||||| ||||||||| |
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| T |
2545440 |
ctttccgcctatgcgaccaccacccgaaccaccacca |
2545476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 15719367 - 15719287
Alignment:
| Q |
152 |
cacaaaacaatcaaatagttgtcacaggt-tctccctcatctcaaatccgaaaacgatgtttcaagctctccccctcatgg |
231 |
Q |
| |
|
||||||||||| |||| ||||||| | | |||||| ||||||||||| |||||| |||||||||||||| ||||||||| |
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|
| T |
15719367 |
cacaaaacaatgaaatggttgtcatggttgtctcccccatctcaaatctgaaaacagtgtttcaagctctctccctcatgg |
15719287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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