View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8412_high_1 (Length: 759)

Name: NF8412_high_1
Description: NF8412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8412_high_1
NF8412_high_1
[»] chr1 (16 HSPs)
chr1 (152-744)||(29434257-29434849)
chr1 (1-141)||(29434944-29435084)
chr1 (45-137)||(41804039-41804131)
chr1 (39-137)||(46973179-46973276)
chr1 (38-137)||(18975119-18975218)
chr1 (70-137)||(36908553-36908620)
chr1 (38-137)||(46141757-46141856)
chr1 (33-137)||(26633505-26633606)
chr1 (1-60)||(29763180-29763240)
chr1 (45-141)||(49927519-49927615)
chr1 (38-137)||(6437538-6437637)
chr1 (45-140)||(11183158-11183253)
chr1 (70-141)||(19054030-19054101)
chr1 (1-58)||(42572718-42572776)
chr1 (37-111)||(52802131-52802205)
chr1 (2-58)||(49395657-49395714)
[»] chr3 (19 HSPs)
chr3 (1-140)||(41802970-41803110)
chr3 (1-141)||(13896837-13896978)
chr3 (1-141)||(55207624-55207765)
chr3 (3-111)||(52570529-52570638)
chr3 (38-141)||(19440227-19440330)
chr3 (1-81)||(43476223-43476304)
chr3 (1-141)||(51402359-51402500)
chr3 (45-141)||(7247866-7247962)
chr3 (1-81)||(55385168-55385249)
chr3 (1-80)||(24703376-24703456)
chr3 (1-111)||(34694395-34694506)
chr3 (38-141)||(2432942-2433045)
chr3 (38-137)||(41579723-41579822)
chr3 (55-138)||(42756133-42756216)
chr3 (1-110)||(46347682-46347791)
chr3 (38-87)||(1294076-1294125)
chr3 (46-111)||(41805682-41805747)
chr3 (46-111)||(46344938-46345003)
chr3 (1-137)||(49219752-49219889)
[»] chr7 (10 HSPs)
chr7 (1-141)||(30355200-30355341)
chr7 (1-141)||(28980133-28980275)
chr7 (33-137)||(46860486-46860590)
chr7 (1-111)||(36394899-36395010)
chr7 (1-137)||(46863305-46863442)
chr7 (46-110)||(41049196-41049260)
chr7 (70-137)||(21185594-21185661)
chr7 (1-110)||(41047779-41047889)
chr7 (1-85)||(40587688-40587773)
chr7 (39-137)||(47060902-47060999)
[»] chr2 (13 HSPs)
chr2 (1-141)||(41500195-41500336)
chr2 (39-141)||(25184830-25184931)
chr2 (1-141)||(43491080-43491221)
chr2 (39-141)||(35490651-35490753)
chr2 (1-137)||(24512142-24512279)
chr2 (39-135)||(43943666-43943762)
chr2 (1-90)||(10365753-10365843)
chr2 (39-141)||(34921759-34921860)
chr2 (1-61)||(2920477-2920538)
chr2 (45-137)||(2917658-2917750)
chr2 (33-141)||(35493335-35493443)
chr2 (38-87)||(26543988-26544037)
chr2 (39-108)||(41183224-41183292)
[»] chr4 (18 HSPs)
chr4 (6-137)||(29700268-29700400)
chr4 (1-81)||(56138283-56138364)
chr4 (1-111)||(958555-958665)
chr4 (38-141)||(37959719-37959822)
chr4 (2-81)||(4786296-4786376)
chr4 (38-141)||(11494515-11494617)
chr4 (1-87)||(44561291-44561378)
chr4 (45-111)||(6280858-6280924)
chr4 (33-137)||(955767-955871)
chr4 (45-141)||(8109362-8109458)
chr4 (38-110)||(33383807-33383879)
chr4 (39-135)||(41023363-41023459)
chr4 (49-137)||(49572910-49572998)
chr4 (1-51)||(34530756-34530807)
chr4 (39-137)||(9889969-9890067)
chr4 (39-137)||(21470878-21470976)
chr4 (33-111)||(51426538-51426616)
chr4 (3-111)||(1041936-1042045)
[»] chr8 (11 HSPs)
chr8 (1-141)||(41858084-41858223)
chr8 (45-138)||(41855342-41855435)
chr8 (1-137)||(18441402-18441539)
chr8 (38-137)||(18438609-18438708)
chr8 (2-77)||(26451515-26451591)
chr8 (39-141)||(18205757-18205859)
chr8 (39-141)||(40077250-40077352)
chr8 (39-111)||(42602461-42602533)
chr8 (55-141)||(39751045-39751130)
chr8 (48-137)||(7168063-7168152)
chr8 (38-111)||(42605233-42605306)
[»] chr6 (3 HSPs)
chr6 (1-137)||(12783918-12784055)
chr6 (1-141)||(13401457-13401598)
chr6 (38-137)||(13404631-13404730)
[»] chr5 (13 HSPs)
chr5 (70-137)||(18310052-18310119)
chr5 (1-140)||(18307226-18307366)
chr5 (2-137)||(20192328-20192464)
chr5 (38-137)||(3603147-3603246)
chr5 (45-137)||(34682232-34682324)
chr5 (39-137)||(18538335-18538433)
chr5 (45-137)||(8702204-8702296)
chr5 (33-137)||(25499881-25499985)
chr5 (45-141)||(41201699-41201795)
chr5 (1-111)||(542751-542862)
chr5 (39-137)||(34123935-34124033)
chr5 (38-111)||(20200147-20200220)
chr5 (1-81)||(25497542-25497623)
[»] scaffold0794 (1 HSPs)
scaffold0794 (39-108)||(5276-5344)
[»] scaffold0618 (1 HSPs)
scaffold0618 (46-111)||(3886-3951)


Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 152 - 744
Target Start/End: Complemental strand, 29434849 - 29434257
Alignment:
Q  152 aaaagaaacaacaaacagcgggcatcaaattttaacaagcactaagctcacaggcagcttataagctaattttaacgagctgtaagctaggaaaaggaat 251  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  29434849 aaaagaaacaacaaacagcggccatcaaattttaacaagcactaagctcacaggcagcttataagctaattttaacaagctgtaagctaggaaatggaat 29434750  T
Q  252 tttgggcaatttagtacggagctgctactgtatccgtatgaacttgtcatcaatcacgacactctcactgtgttgatcgcagcatatttcatttcaaatt 351  Q
    ||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29434749 tttgggcaatttagtgcggagctgctacagtatccgtatcaacttgtcatcaatcacgacactctcactgtgttgatcgcagcatatttcatttcaaatt 29434650  T
Q  352 ccaaccctagaacacagtctgagaaatgtattcttgtattcctcacaacgtttctctccattttcacttctcaacaacaacttccccaaattcaaagtca 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29434649 ccaaccctagaacacagtctgagaaatgtattcttgtattcctcacaacgtttctctccattttcacttctcaacaacaacttccccaaattcaaagtca 29434550  T
Q  452 acggtacttttcaactcttaatcttctcattacttcgnnnnnnncgtcacaatcttcactttatcttctttctctgcagatgtttgcttcacgcaatttg 551  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29434549 acggtacttttcaactcttaatcttctcattacttcgtttttttcgtcacaatcttcactttatcttctttctctgcagatgtttgcttcacgcaatttg 29434450  T
Q  552 aagattcgcgctgtatccactacggagaatcaagcttctacttacattcctgctgctcccattttccttccccaaggtccttggaagcgggtcattttct 651  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29434449 aagattcgcgctgtatccactacggagaatcaagcttctacttacattcctgctgctcccattttccttccccaaggtccttggaagcaggtcattttct 29434350  T
Q  652 aattcgattgttccttcctcttctttcgttactttgctcagtttctttcacgtcttttatgtttaaacttagtatttacattactgtgatttt 744  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29434349 aattcgattgctccttcctcttctttcgttactttgctcagtttctttcacgtcttttatgtttaaacttagtatttacattactgtgatttt 29434257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 29435084 - 29434944
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcg 100  Q
    |||||||||| |||||||||||||||||||||||||| || || ||||||||| ||||||||| || ||||||||||||||||||||||| |||||||||    
T  29435084 ggatgagagaacttctgccaaatttgtagcaaaaatcctctgcagttaactaccgaggttgtcatcggaagttaactgcagtcggttattgaattcttcg 29434985  T
Q  101 acagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    | |||||||||  |||  || |||| ||||||||| |||||    
T  29434984 aaagttaactgccaagagggtaaaaacgtattttattcgtg 29434944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 41804039 - 41804131
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||||||| |||||| ||||| | |||||||||||||||||| || ||||| ||| ||||||||||   | | |||||||||||||||||||    
T  41804039 gttaactaccgaggttttcctcggcagttaactgcagtcggtttttgaattcctcggcagttaactgccgaaggggcaaaagcgtattttact 41804131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 46973276 - 46973179
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||| |||||||| ||||||| ||||| | |||||||||||| ||||| || ||||| ||| ||||||||||  |||| ||||||| |||||||||||    
T  46973276 tcggcagttaacta-tgaggttttcctcggcagttaactgcagccggtttttgaattcctcggcagttaactgccaagggggcaaaatcgtattttact 46973179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 18975119 - 18975218
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| ||||||||| || ||| ||||| | |||||||||||  | |||||||||||| |||||||||||| |   ||| ||||||| |||||||||||    
T  18975119 ttcggcagttaactaccgaagttttcctctgcagttaactgcaaccagttattaaattcctcgacagttaaccgccgagggggcaaaaacgtattttact 18975218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 36908620 - 36908553
Alignment:
Q  70 agttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||||||||| ||||| || ||||||||||||||||||||   |||||||||||  ||||||||||    
T  36908620 agttaactgcagccggtttttgaattcttcgacagttaactgccgaggaggcaaaaatgtattttact 36908553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 46141856 - 46141757
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| ||||||||| || ||| ||||| | |||||||||||| |||||||| ||||| ||| ||||||||||   ||  ||||||| |||||||||||    
T  46141856 ttcggcagttaactaccgatgttttcctcggcagttaactgcagccggttattgaattcctcggcagttaactgccgagagggcaaaatcgtattttact 46141757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 26633606 - 26633505
Alignment:
Q  33 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 132  Q
    |||| |||||| ||||||||| |||||| ||||| | |||||||||||  ||||| || |||||||||  ||||||| |   ||| ||||||||||||||    
T  26633606 aaattttcggcagttaactaccgaggttttcctcggcagttaactgcaaccggtttttgaattcttcggtagttaaccg---agggggcaaaagcgtatt 26633510  T
Q  133 ttact 137  Q
    |||||    
T  26633509 ttact 26633505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29763180 - 29763240
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggtt 60  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| ||||||    
T  29763180 ggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggtt 29763240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 49927519 - 49927615
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    ||||||||| |||||| | ||| | ||||||||  || ||||| |||||||||||| ||||||||||   ||| | ||||| |||||||||||||||    
T  49927519 gttaactaccgaggtttttctcggcagttaactatagccggtttttaaattcttcggcagttaactgccgaggggacaaaaacgtattttactcgtg 49927615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 6437538 - 6437637
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| | ||||||| |||||| ||||  | ||||||||||||||| ||||| | ||| ||| ||||||||||   ||  |||||||||||||||||||    
T  6437538 ttcggcagataactaccgaggttttccttggtagttaactgcagtcgattattgacttcctcggcagttaactgccgagagggcaaaagcgtattttact 6437637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 11183253 - 11183158
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgt 140  Q
    ||||||||| |||||| ||||| | |||||||||||| ||| | || ||||| ||  ||||||||||  ||||  |||||| ||||||||||||||    
T  11183253 gttaactaccgaggttttcctcggcagttaactgcagccggatttttaattcctcagcagttaactgtcaagggagcaaaaacgtattttactcgt 11183158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 19054101 - 19054030
Alignment:
Q  70 agttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    |||||||||||| ||||| || ||||| ||| ||||||||||   ||| ||||||| |||||||||||||||    
T  19054101 agttaactgcagccggtttttgaattcctcggcagttaactgtcgagggggcaaaaacgtattttactcgtg 19054030  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42572718 - 42572776
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgagg 58  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| ||||    
T  42572718 ggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 42572776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 52802205 - 52802131
Alignment:
Q  37 cttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 111  Q
    ||||||| ||||||||| |||||| ||||| | |||||||||||| ||| | | |||||| ||| ||||||||||    
T  52802205 cttcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactg 52802131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 49395714 - 49395657
Alignment:
Q  2 gatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgagg 58  Q
    ||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| ||||    
T  49395714 gatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 49395657  T

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Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 41803110 - 41802970
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||| |||||| ||||| | |||||||||||| ||||| |||||||||||    
T  41803110 ggatgagagagcttctgccagatttgtagcaaaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcagccggtttttaaattcttc 41803011  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttactcgt 140  Q
    | ||||||||||   ||  ||||||| ||||||||||||||    
T  41803010 ggcagttaactgccgagtgggcaaaaacgtattttactcgt 41802970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 13896837 - 13896978
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||| |||||||| | |||||||||||| ||||||||| |||||| |||||   |||||||||||| | |||||||||||||||    
T  13896837 ggatgagagagcttctgccagatttgtagtagaaaatcttcggcagttaactaccgaggttttcctcgacagttaactgcagccagttattaaattcttc 13896936  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
      || |||||||   ||||| ||||| | |||||||||||||    
T  13896937 agcaattaactgccgaggagtcaaaaacatattttactcgtg 13896978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 55207624 - 55207765
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| |||||||||  ||||||||||  | |||||||||||  ||||| || ||||||||    
T  55207624 ggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccaaggttgtcctaggcagttaactgcaaccggtttttgaattcttc 55207723  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    | ||||||||||   | | |||||||| ||||||||||||||    
T  55207724 ggcagttaactgccgatggggcaaaagagtattttactcgtg 55207765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 52570529 - 52570638
Alignment:
Q  3 atgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcga 101  Q
    ||||||||| |||||||| |||||||| | || ||| ||||| ||||||||| |||||| | ||| | |||||||||||||||||| || |||||||||     
T  52570529 atgagagagtttctgccagatttgtagtagaagatcctcggcagttaactaccgaggtttttctcggtagttaactgcagtcggtttttgaattcttcgg 52570628  T
Q  102 cagttaactg 111  Q
    ||||||||||    
T  52570629 cagttaactg 52570638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 19440330 - 19440227
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| ||||||||| |||||| ||||| | |||||||||||| |||||  | ||||||||| ||||||||||   ||||||||||||  |||||||||    
T  19440330 ttcggcagttaactaccgaggttttcctcggcagttaactgcagccggtttatgaattcttcggcagttaactgccgaggaggcaaaagtttattttact 19440231  T
Q  138 cgtg 141  Q
    ||||    
T  19440230 cgtg 19440227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 43476304 - 43476223
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcag 81  Q
    ||||||||||||||||| || ||||||||||||| ||| ||||| ||||||||| |||||| ||||| | ||||||||||||    
T  43476304 ggatgagagagcttctgtcagatttgtagcaaaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcag 43476223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 51402359 - 51402500
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    ||||||||||||||||| || |||||||||| || ||| ||||| ||||||||| |||||| |||||   |||||||| || ||| || || |||| |||    
T  51402359 ggatgagagagcttctgacagatttgtagcagaagatcctcggcagttaactaccgaggttttcctcgacagttaactacaatcgatttttgaattattc 51402458  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
      || ||||||| | |||| |||||| |||||||||||||||    
T  51402459 tgcaattaactgctgaggaagcaaaaacgtattttactcgtg 51402500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 7247866 - 7247962
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    ||||||||| |||||| |||||   |||||||||||| |||||||| ||||| ||| ||||||||||   ||| ||||||||||||||||| |||||    
T  7247866 gttaactaccgaggttttcctcgtcagttaactgcagccggttattgaattcctcggcagttaactgccgagggggcaaaagcgtattttattcgtg 7247962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 55385249 - 55385168
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcag 81  Q
    |||||||||||||||||||| |||||||||| || ||| ||| | ||||||||| |||||| ||||| | ||||||||||||    
T  55385249 ggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaactaccgaggttttcctcggcagttaactgcag 55385168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 24703376 - 24703456
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgca 80  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| ||||||| |||||| | ||||| | |||||||||||    
T  24703376 ggatgagagagcttctgccagatttgtagcagaagatcatcggcagttaactcctgaggatttcctcggcagttaactgca 24703456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34694395 - 34694506
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| ||||||| | |||||| | ||| | |||| ||||||| ||| | |  ||||| ||    
T  34694395 ggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactcccgaggtttttctcggcagtttactgcagccggatttctaattcctc 34694494  T
Q  100 gacagttaactg 111  Q
    ||||||||||||    
T  34694495 gacagttaactg 34694506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 2432942 - 2433045
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| |||||||||  ||||| |||||   ||||||||| |  |||||||| ||||| ||||||||||||||   ||| |  ||||||||||||||||    
T  2432942 ttcggcagttaactaccaaggttttcctcgacagttaactgtatccggttattgaattcctcgacagttaactgccgaggggataaaagcgtattttact 2433041  T
Q  138 cgtg 141  Q
    ||||    
T  2433042 cgtg 2433045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 41579723 - 41579822
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| ||||||||| |||||| ||||| | |||||||||||| |||||||| ||||| ||  || |||||||   ||| || |||| |||||||||||    
T  41579723 ttcggcagttaactaccgaggttttcctcggcagttaactgcagccggttattgaattcctcagcaattaactgccgagggggaaaaatcgtattttact 41579822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 42756216 - 42756133
Alignment:
Q  55 gaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 138  Q
    |||||| ||||| | |||||||||||  ||| | || ||||| |||||||||||||| | ||| ||||||| ||||||||||||    
T  42756216 gaggttttcctcggcagttaactgcaaccggatttttaattcctcgacagttaactgctgagggggcaaaaacgtattttactc 42756133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 46347682 - 46347791
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    ||||||||||| |||| ||  |||||||||| || ||||||| | ||||| ||  |||||| ||||| | |||||||||||| || ||||| |||| |||    
T  46347682 ggatgagagagtttctccctgatttgtagcagaagatcttcgacagttaattatcgaggttttcctcggcagttaactgcagccgattattgaatt-ttc 46347780  T
Q  100 gacagttaact 110  Q
    |||||||||||    
T  46347781 gacagttaact 46347791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 1294076 - 1294125
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggtt 87  Q
    |||||| ||||||| | |||||| ||||| ||||||||||||||||||||    
T  1294076 ttcggcagttaactgccgaggttttcctcggaagttaactgcagtcggtt 1294125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 41805682 - 41805747
Alignment:
Q  46 ttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 111  Q
    |||||| | |||||| ||||| | |||||| ||||| ||||  |||||||||||||||||||||||    
T  41805682 ttaactcccgaggttttcctcggcagttaattgcagccggtctttaaattcttcgacagttaactg 41805747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 46345003 - 46344938
Alignment:
Q  46 ttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 111  Q
    |||||||| |||||| ||||| | |||||||||||| || || || ||||| ||||||||||||||    
T  46345003 ttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcctcgacagttaactg 46344938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 49219752 - 49219889
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    ||||| ||||||||||| ||||||||||||| || ||| |||   |||||||||  ||||| ||||| | |||||||||||| ||| | |  ||||| ||    
T  49219752 ggatgggagagcttctgtcaaatttgtagcagaagatcctcgatagttaactaccaaggttttcctcggcagttaactgcagccggatttctaattcctc 49219851  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttact 137  Q
    | |||||||||    |||||||||||  ||||||||||    
T  49219852 ggcagttaactaccgaggaggcaaaattgtattttact 49219889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 30355200 - 30355341
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||| ||||| | |||||||||||| || || || ||||||||    
T  30355200 ggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcttc 30355299  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
      || |||||||   ||| |||||||||||||||||||||||    
T  30355300 agcaattaactgccgagggggcaaaagcgtattttactcgtg 30355341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 28980133 - 28980275
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcct-cagaagttaactgcagtcggttattaaattctt 98  Q
    ||||||||||||||||| || |||||||||| |||||| ||||| ||||||||| |||||| |||| | | |||||||||||  ||| |||| |||||||    
T  28980133 ggatgagagagcttctgtcagatttgtagcagaaaatcctcggcagttaactaccgaggttttccttcggcagttaactgcatccggatattgaattctt 28980232  T
Q  99 cgacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    || ||| |||||| | ||| ||||||| |||||||||||||||    
T  28980233 cggcagctaactgctgagggggcaaaaacgtattttactcgtg 28980275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 46860590 - 46860486
Alignment:
Q  33 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 132  Q
    |||| |||||| ||||||| | ||||||  |||||  |||||||||||||||||| || ||||| ||||||||||||||   ||| ||||||||||||||    
T  46860590 aaattttcggcagttaactgccgaggtttgcctcaatagttaactgcagtcggtttttcaattcctcgacagttaactgccgagggggcaaaagcgtatt 46860491  T
Q  133 ttact 137  Q
    |||||    
T  46860490 ttact 46860486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 36394899 - 36395010
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||| |||||||||| || ||| ||||  ||||||||| |||||| ||||| | | |||| |||||||||||  | ||||||||    
T  36394899 ggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaactaccgaggttttcctcggcacttaattgcagtcggtttgtgaattcttc 36394998  T
Q  100 gacagttaactg 111  Q
    | || |||||||    
T  36394999 ggcaattaactg 36395010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 46863305 - 46863442
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||| ||||||||||||| |||||||||| || ||||||||| ||||||||| ||| || || |  | |||||||||||| ||||| || ||||  ||    
T  46863305 ggatgaaagagcttctgccagatttgtagcagaagatcttcggcagttaactacagagattttcgttcgcagttaactgcagccggtttttcaatttctc 46863404  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttact 137  Q
    | ||||||||||   | | ||||||| |||||||||||    
T  46863405 ggcagttaactgccgatggggcaaaaacgtattttact 46863442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 41049196 - 41049260
Alignment:
Q  46 ttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaact 110  Q
    |||||||| |||||| ||||| | |||||||||||| || ||||| |||||||||||||||||||    
T  41049196 ttaactaccgaggttttcctcggcagttaactgcagccgattattgaattcttcgacagttaact 41049260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 21185661 - 21185594
Alignment:
Q  70 agttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||||| ||| |||||||| ||||||||| ||||||||||   ||||||||||| |||||||||||    
T  21185661 agttaactacagccggttattgaattcttcggcagttaactgccgaggaggcaaaatcgtattttact 21185594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41047889 - 41047779
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||  ||| |||||||||| || ||| ||||| ||||||||| || ||| ||||| | |||||||| ||  || ||||||||||||||    
T  41047889 ggatgagagagcttcctccagatttgtagcagaagatcctcggcagttaactaccgaagttttcctcggcagttaactacacccgattattaaattcttc 41047790  T
Q  100 gacagttaact 110  Q
      |||||||||    
T  41047789 tgcagttaact 41047779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 40587773 - 40587688
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcgg 85  Q
    ||||||||||||||||  || |||| ||||| || ||| ||||| |||||||||||||||| |||||   ||||||||||||||||    
T  40587773 ggatgagagagcttctttcagatttatagcataagatcctcggcagttaactactgaggttttcctcgacagttaactgcagtcgg 40587688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 47060999 - 47060902
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||| ||||||||| |||||| ||||| | |||||||| ||| || || || ||||| ||||||||||||||   ||| ||||||| |||||||||||    
T  47060999 tcggcagttaactaccgaggttttcctcggcagttaactacagccgatt-ttgaattcctcgacagttaactgccgagggggcaaaaacgtattttact 47060902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 41500195 - 41500336
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||| ||||| |||||||||| || ||| ||||| ||||||||| |||||| | ||| | |||||||||||| ||| | || |||||||     
T  41500195 ggatgagagagcttatgccagatttgtagcagaagatcctcggcagttaactaccgaggtttttctcggcagttaactgcagccggattttgaattcttt 41500294  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    || |||||||||   ||| |||||||||||||||||||||||    
T  41500295 gatagttaactgccgagggggcaaaagcgtattttactcgtg 41500336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 25184830 - 25184931
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 138  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||| ||||| | |||||| |||||||||||||| | ||| ||||||| ||||||||||||    
T  25184830 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggtt-tcaaattcctcgacagttaactgctgagggggcaaaaacgtattttactc 25184928  T
Q  139 gtg 141  Q
    |||    
T  25184929 gtg 25184931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 43491221 - 43491080
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||| |||| || || || ||  ||||| |||||||||  ||||| |||||   |||||| ||||| |||||||||||||| ||    
T  43491221 ggatgagagagcttctgccagatttataacagaagattctcggcagttaactaccaaggttttcctcgacagttaattgcagccggttattaaattcctc 43491122  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    | |||||||||| |||| || ||||||  |||||||||||||    
T  43491121 ggcagttaactgttaagaagacaaaagtatattttactcgtg 43491080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 35490753 - 35490651
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 138  Q
    ||||| |||||||||  ||||| || |||| |||||||||||| ||||| || ||||||||| |||||||| |   |||||||||||  |||||||||||    
T  35490753 tcggcagttaactaccaaggttttcttcagcagttaactgcagccggtttttgaattcttcggcagttaaccgtcgaggaggcaaaaatgtattttactc 35490654  T
Q  139 gtg 141  Q
    |||    
T  35490653 gtg 35490651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24512279 - 24512142
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||| |  || | | ||||||||||  |||| || ||||| ||    
T  24512279 ggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggtttttttcggcaattaactgcagctggttttttaattcctc 24512180  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttact 137  Q
     |||||||||||   ||| || |||| |||||||||||    
T  24512179 aacagttaactgtcgagggggtaaaaacgtattttact 24512142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 43943762 - 43943666
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatttta 135  Q
    ||||| ||||||||| ||| || |||||   |||||||||||| |||||||||||||| |||| ||||||||| | ||| || |||| |||||||||    
T  43943762 tcggcagttaactaccgagtttttcctcgacagttaactgcagccggttattaaattcctcgagagttaactgctgagggggaaaaatcgtatttta 43943666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10365753 - 10365843
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttatt 90  Q
    |||||||||||||| ||||| ||||||||||||| ||| |||||  ||||||||  ||||| ||||| | |||||||| ||| ||||||||    
T  10365753 ggatgagagagcttatgccagatttgtagcaaaagatcctcggcatttaactaccaaggttttcctcggcagttaactacagccggttatt 10365843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 34921759 - 34921860
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 138  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||| ||||| || ||||  ||| ||||||||| |   || ||||||| ||||||||||||    
T  34921759 tcggcagttaactaccgaggttttcctcagcagttaactgcagccggtttttgaatttctcggcagttaact-accggggggcaaaaacgtattttactc 34921857  T
Q  139 gtg 141  Q
    |||    
T  34921858 gtg 34921860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2920477 - 2920538
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttg 61  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||||    
T  2920477 ggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggttg 2920538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 2917750 - 2917658
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||||||||||||| ||||| | ||||||||| || ||||| || ||||  ||| ||||||||||   ||| ||||||| |||||||||||    
T  2917750 gttaactactgaggttttcctcggcagttaactgtagccggtttttcaatttctcggcagttaactgccgagggggcaaaaacgtattttact 2917658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 35493335 - 35493443
Alignment:
Q  33 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 132  Q
    |||| |||||| ||||||||| ||  || ||||| | ||||||||||||  |||| || ||||| ||| |||||||||    ||| ||||||||||||||    
T  35493335 aaattttcggcagttaactaccgatattttcctcggcagttaactgcagctggtttttgaattcctcggcagttaactaccgagggggcaaaagcgtatt 35493434  T
Q  133 ttactcgtg 141  Q
    |||||||||    
T  35493435 ttactcgtg 35493443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 26543988 - 26544037
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggtt 87  Q
    |||||| ||||||||| |||||| ||||||| |||||||||||| |||||    
T  26543988 ttcggcagttaactaccgaggttttcctcagtagttaactgcagccggtt 26544037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 41183224 - 41183292
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaa 108  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||| ||||| | |||||||||| |||||||    
T  41183224 tcggcagttaactaccgaggttttcctcggtagttaactgcagccggtt-tcaaattcttcggcagttaa 41183292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 29700268 - 29700400
Alignment:
Q  6 agagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacag 104  Q
    ||||||||||||||| |||||||||| || ||| |||||  |||||||| |||||| ||||| | |||||||||||| |||||||| ||||| ||  |||    
T  29700268 agagagcttctgccagatttgtagcagaagatcatcggcaattaactaccgaggttttcctcggcagttaactgcagccggttattgaattcctcagcag 29700367  T
Q  105 ttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||||   ||||| |||||||||||||||||    
T  29700368 ttaactgtcgaggagacaaaagcgtattttact 29700400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 56138364 - 56138283
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcag 81  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| |||||||||||||||| ||||| | ||||||||||||    
T  56138364 ggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactactgaggttttcctcggcagttaactgcag 56138283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 958555 - 958665
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||  |||||||||| || ||| ||||| ||||||||| |||||| ||||| | |||||||||||  ||||| || ||||| ||    
T  958555 ggatgagagagcttctgccggatttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactgcaaccggtttttgaattcatc 958654  T
Q  100 gacagttaactg 111  Q
    | ||||||||||    
T  958655 g-cagttaactg 958665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 37959719 - 37959822
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| ||||||||| || ||| ||||| | ||||||||||||  ||||||||||||| || |||||||||||   ||| || |||| |||||||||||    
T  37959719 ttcggcagttaactaccgatgttttcctcggcagttaactgcagctggttattaaattcctcaacagttaactgccgagggggtaaaaacgtattttact 37959818  T
Q  138 cgtg 141  Q
    ||||    
T  37959819 cgtg 37959822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 4786296 - 4786376
Alignment:
Q  2 gatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcag 81  Q
    ||||||||||||||| ||| |||||||||| || ||| ||||| |||||| || |||||| ||||||| ||||||||||||    
T  4786296 gatgagagagcttctaccagatttgtagcagaagatcatcggcagttaacaaccgaggttttcctcagtagttaactgcag 4786376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 11494617 - 11494515
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| ||||||||| |||||| ||||| | |||||||||||| ||||| || ||||| ||||||||||| ||   ||| | ||||| |||||||||||    
T  11494617 ttcggcagttaactaccgaggttttcctcggcagttaactgcagccggtt-ttgaattcctcgacagttaattgccgaggggacaaaaacgtattttact 11494519  T
Q  138 cgtg 141  Q
    ||||    
T  11494518 cgtg 11494515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 44561291 - 44561378
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggtt 87  Q
    |||||||||||||||||||| |||||||||| |  ||| ||||| ||||||||| ||| || ||||| | |||||||||||| |||||    
T  44561291 ggatgagagagcttctgccagatttgtagcagacgatcctcggcagttaactaccgagattttcctcggtagttaactgcagccggtt 44561378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 6280924 - 6280858
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 111  Q
    ||||||||| || ||| ||||||| | |||||||||| ||||| |||||||||| ||||||||||||    
T  6280924 gttaactaccgatgttttcctcagtatttaactgcagccggtttttaaattctttgacagttaactg 6280858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 955871 - 955767
Alignment:
Q  33 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 132  Q
    |||| |||||| ||||||||| |||||| | ||| | |||||||||||| || || || ||||| ||  ||||||||||  || ||||||||| ||||||    
T  955871 aaattttcggcagttaactaccgaggtttttctcggcagttaactgcagccgatttttgaattcctcagcagttaactgccaaagaggcaaaaacgtatt 955772  T
Q  133 ttact 137  Q
    |||||    
T  955771 ttact 955767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 8109458 - 8109362
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    ||||||| | |||||| ||||| | ||||||||| || ||| |||| ||||| |||||||||||||   |||| || |||| |||||||||||||||    
T  8109458 gttaactcccgaggttttcctcggcagttaactgtagccggatatttaattcctcgacagttaactaccaagggggtaaaatcgtattttactcgtg 8109362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 33383879 - 33383807
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaact 110  Q
    |||||| ||||||| | |||||| ||||| | |||||||||||||||||| ||||| || |||||| ||||||    
T  33383879 ttcggcagttaacttccgaggttttcctcggcagttaactgcagtcggtttttaaaatcctcgacaattaact 33383807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 41023459 - 41023363
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatttta 135  Q
    ||||| ||||||||| |||| | ||||||| |||||||||||| ||| | | |||||  ||| ||||||||||  ||||||| |||| |||||||||    
T  41023459 tcggcagttaactaccgaggatttcctcagcagttaactgcagccggatttcaaatttctcggcagttaactgccaaggaggtaaaatcgtatttta 41023363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 49572910 - 49572998
Alignment:
Q  49 actactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||| |||||| ||||| | |||||||||||| || ||||| ||||| ||||||||||||||   | | ||||||| |||||||||||    
T  49572910 actaccgaggttttcctcggcagttaactgcagccgattattgaattcctcgacagttaactgtcgatggggcaaaaacgtattttact 49572998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34530756 - 34530807
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaact 51  Q
    ||||||||||||||||||||||||||||||| || ||| ||||| |||||||    
T  34530756 ggatgagagagcttctgccaaatttgtagcagaagatcctcggcagttaact 34530807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 9890067 - 9889969
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||| ||| | | |||||| ||| ||||||||||   ||| || |||| |||||||||||    
T  9890067 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtattttact 9889969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 21470976 - 21470878
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||| ||||||||| |||||| ||||| |  ||||||||||||| ||| || ||| | ||||||||||||||   || || ||||| |||||||||||    
T  21470976 tcggcagttaactaccgaggttttcctctgcggttaactgcagtcagtttttgaatacctcgacagttaactgccgagaagacaaaaacgtattttact 21470878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 51426616 - 51426538
Alignment:
Q  33 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 111  Q
    |||| |||||| |||||||||||||||| | ||| | | |||||||||| || || || ||||| ||||||||||||||    
T  51426616 aaattttcggcagttaactactgaggtttttctcggcaattaactgcagccgatttttgaattcctcgacagttaactg 51426538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 1042045 - 1041936
Alignment:
Q  3 atgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcga 101  Q
    |||||||||||| ||||| |||||||| | || ||| ||||| ||||||||| ||| || | ||| | |||||||||||||||| | |  ||||| |||     
T  1042045 atgagagagcttatgccagatttgtagtagaagatcctcggcagttaactaccgagatttttctcggcagttaactgcagtcggatttctaattcctcgg 1041946  T
Q  102 cagttaactg 111  Q
    ||||||||||    
T  1041945 cagttaactg 1041936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 41858084 - 41858223
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||||||||| |||||||||| || ||| ||| | ||||||| | ||||||  |||| | |||||||||||| ||||| || ||||||||    
T  41858084 ggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaactcccgaggtt--cctcggcagttaactgcagccggtttttgaattcttc 41858181  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    | ||||||||||   ||| ||||||| |||||||||||||||    
T  41858182 gccagttaactgccgagggggcaaaaacgtattttactcgtg 41858223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 41855435 - 41855342
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 138  Q
    ||||||||| |||||| ||||| | |||||||||||| || || || ||||||||||||||||||||   ||||||||||| ||||||||||||    
T  41855435 gttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgaggaggcaaaaacgtattttactc 41855342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 18441402 - 18441539
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    ||||||||||| |||||||| |||||||||| || ||| ||||| ||||||| | |||||| | ||| | |||||||| || ||||||||| ||||  ||    
T  18441402 ggatgagagagtttctgccagatttgtagcagaagatcctcggcagttaactgccgaggtttttctcggcagttaactacaatcggttattgaatttctc 18441501  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttact 137  Q
    | ||||||||||   ||| ||||||| |||||||||||    
T  18441502 ggcagttaactgccgagggggcaaaaacgtattttact 18441539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 18438708 - 18438609
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| ||||||| | |||||| ||||| | |||||||||||| |||||||| ||||| || |||||||||||   | | |||||||||||||||||||    
T  18438708 ttcggcagttaactcccgaggttttcctcggcagttaactgcagccggttattgaattcctcaacagttaactgccgaaggggcaaaagcgtattttact 18438609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 26451591 - 26451515
Alignment:
Q  2 gatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaact 77  Q
    ||||||||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||| ||||| | ||||||||    
T  26451591 gatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaact 26451515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 18205859 - 18205757
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 138  Q
    ||||| ||||||||| |||||| ||||  | |||||||||||| ||||| || ||||||||| |||||||| |   ||| || |||| ||||||||||||    
T  18205859 tcggcagttaactaccgaggttttccttggcagttaactgcagccggtttttgaattcttcggcagttaaccgccgaggtggtaaaaacgtattttactc 18205760  T
Q  139 gtg 141  Q
    |||    
T  18205759 gtg 18205757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 40077250 - 40077352
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactc 138  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||||||| | || ||| | | ||||||| || | | ||| ||||||| ||||||||||||    
T  40077250 tcggcagttaactaccgaggttttcctcggcagttaactgcagtcggatttttaataccttgacagtttaccgttgagggggcaaaaacgtattttactc 40077349  T
Q  139 gtg 141  Q
    |||    
T  40077350 gtg 40077352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 42602533 - 42602461
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 111  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||  ||||| || ||||||||| ||||||||||    
T  42602533 tcggcagttaactaccgaggttttcctcggcagttaactgcatccggtttttgaattcttcggcagttaactg 42602461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 39751130 - 39751045
Alignment:
Q  55 gaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    |||||| ||||| | |||||||||||| ||||| | |||||| ||| ||||||| ||  |||| ||||||| |||||||||||||||    
T  39751130 gaggttttcctcggcagttaactgcagccggtt-tcaaattcatcggcagttaattgccaagggggcaaaaacgtattttactcgtg 39751045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 7168152 - 7168063
Alignment:
Q  48 aactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| |||||| ||||| | |||||||||||| ||||| || ||||||||| ||| |||| |   ||| ||||||| |||||||||||    
T  7168152 aactaccgaggttttcctcggcagttaactgcagccggtttttgaattcttcggcagctaacagtcgagggggcaaaatcgtattttact 7168063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 42605233 - 42605306
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 111  Q
    |||||| ||||||||| || ||| || || | |||||||||||| || || || ||||||||||||||||||||    
T  42605233 ttcggcagttaactaccgatgttttcatcggcagttaactgcagccgatttttgaattcttcgacagttaactg 42605306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 12783918 - 12784055
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||||||| | ||| |||||||||| || ||| ||||| |||||||||||||||| |||||   || ||||||||| |||||||| ||||| ||    
T  12783918 ggatgagagagctttttccagatttgtagcagaagatcctcggcagttaactactgaggttttcctcgacagctaactgcagccggttattgaattcatc 12784017  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttact 137  Q
    | ||||||||||   | | |||||||||||||||||||    
T  12784018 ggcagttaactgccgatggggcaaaagcgtattttact 12784055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13401598 - 13401457
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    ||||||||||||||||| || |||||||||| || ||| ||||  |||||||||  |  || |||| || |||||||||||| || || || ||||| ||    
T  13401598 ggatgagagagcttctgtcatatttgtagcagaagatcctcggtagttaactaccaatattttccttagcagttaactgcagccgattttttaattcctc 13401499  T
Q  100 gacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    | ||||||||||   ||| ||||||||| ||||| |||||||    
T  13401498 ggcagttaactgccgagggggcaaaagcatatttaactcgtg 13401457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 13404631 - 13404730
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| |||||||||  ||||| ||| | | ||||||||||||  ||||||| ||||| |||||||||||||    ||| |||||| ||||||||||||    
T  13404631 ttcggcagttaactaccaaggttttccacggcagttaactgcagcaggttattgaattcctcgacagttaactaccgagggggcaaacgcgtattttact 13404730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 18310052 - 18310119
Alignment:
Q  70 agttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||| |||||||||||    
T  18310052 agttaactgcagtcggttattgaattcctcgacagttaactgctgaggaggcaaaaacgtattttact 18310119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 18307366 - 18307226
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    ||||||||| |||||||||| |||||||||| || ||| ||||| ||||||||| |||||| ||||| | |||||||| ||| || || || ||||| ||    
T  18307366 ggatgagagggcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggttttcctcggcagttaactacagccgattttttaattcctc 18307267  T
Q  100 gacagttaactg-ataaggaggcaaaagcgtattttactcgt 140  Q
    ||||||||||||   ||||| |||||| ||||||||||||||    
T  18307266 gacagttaactgccgaagga-gcaaaaacgtattttactcgt 18307226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 20192464 - 20192328
Alignment:
Q  2 gatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcg 100  Q
    ||||||||||||||||||| |||||||||| || ||| |||||  |||||||  || ||| ||||| | |||||||||||| || ||||| ||||||||     
T  20192464 gatgagagagcttctgccagatttgtagcagaagatcctcggcatttaactatcgaagttttcctcggcagttaactgcagccgattattgaattcttca 20192365  T
Q  101 acagttaactgataaggaggcaaaagcgtattttact 137  Q
     |||||||||||  | | ||||||| |||||||||||    
T  20192364 gcagttaactgacgaaggggcaaaatcgtattttact 20192328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 3603147 - 3603246
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    |||||| ||||||||| |||||| ||||| |||||||||||||| | |||||| ||||||||| ||||||||||   |||  |||||| |||||||||||    
T  3603147 ttcggcagttaactaccgaggttttcctcggaagttaactgcagccagttattgaattcttcggcagttaactgtcgagggagcaaaaacgtattttact 3603246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 34682324 - 34682232
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||||| | |||||| ||||| | |||||||||||| ||||| || ||||| ||||||||||||||  ||||  ||||||||||||||||||    
T  34682324 gttaactcccgaggttttcctcggcagttaactgcagccggtttttgaattcctcgacagttaactgtcaagggagcaaaagcgtattttact 34682232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 18538335 - 18538433
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||| ||||||||| || ||| ||||| | |||||||||||| ||||| || ||||| |||||| |||||||   ||| ||||||| |||||||||||    
T  18538335 tcggcagttaactaccgaagttttcctcggcagttaactgcagccggtttttgaattcctcgacaattaactgccgagggggcaaaatcgtattttact 18538433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 8702204 - 8702296
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||||||| |||||| ||||||| |||||||||||||| | | || ||||| ||| ||||||||||   |||  |||||| |||||||||||    
T  8702204 gttaactaccgaggttttcctcagcagttaactgcagtcagatttttaattcctcggcagttaactgtcgagggagcaaaatcgtattttact 8702296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 25499881 - 25499985
Alignment:
Q  33 aaatcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtatt 132  Q
    |||| ||||||  ||||||||| ||||| ||||| | ||||||| |||  ||||| || ||||| |||| |||||||||   ||| ||||||||||||||    
T  25499881 aaattttcggcacttaactactaaggttttcctcggcagttaaccgcaaccggtttttgaattcctcgatagttaactgccgagggggcaaaagcgtatt 25499980  T
Q  133 ttact 137  Q
    |||||    
T  25499981 ttact 25499985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 41201795 - 41201699
Alignment:
Q  45 gttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttactcgtg 141  Q
    ||||||||| |||||| ||||| | |||||||||||| |||||||| ||||| |||||| |||| ||   ||  | ||||| |||||||||||||||    
T  41201795 gttaactaccgaggttttcctcggcagttaactgcagccggttattgaattcctcgacaattaattgtcgagaggacaaaatcgtattttactcgtg 41201699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 542751 - 542862
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagcaaaa-atcttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttc 99  Q
    |||||||||| ||||||||| |||||||||| || ||| ||||| ||||||||| |||  | ||||| | ||||| |||||| ||| | |  ||||| ||    
T  542751 ggatgagagaacttctgccagatttgtagcagaagatcctcggcagttaactaccgagagtttcctcggcagttagctgcagccggatttctaattcctc 542850  T
Q  100 gacagttaactg 111  Q
    ||||||||||||    
T  542851 gacagttaactg 542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 34123935 - 34124033
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactgataaggaggcaaaagcgtattttact 137  Q
    ||||| ||||||||| |||||| ||||  | |||||||||||| ||| | | |||||  ||||||||||||||   ||| ||||||| |||||||||||    
T  34123935 tcggcagttaactaccgaggttttccttggcagttaactgcagccggatttcaaatttctcgacagttaactgccgagggggcaaaatcgtattttact 34124033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 20200147 - 20200220
Alignment:
Q  38 ttcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 111  Q
    |||||| ||||||||| || ||| ||||| | ||||||||||||| ||||||| ||||  | ||||||||||||    
T  20200147 ttcggcagttaactacagatgttttcctcggcagttaactgcagttggttattgaatttcttgacagttaactg 20200220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25497623 - 25497542
Alignment:
Q  1 ggatgagagagcttctgccaaatttgtagca-aaaatcttcggcggttaactactgaggttgtcctcagaagttaactgcag 81  Q
    |||||||||||||||||||  |||||||||| || ||  ||||| ||||||||| ||| || ||||| | ||||||||||||    
T  25497623 ggatgagagagcttctgcctgatttgtagcagaagattctcggcagttaactaccgagattttcctcggcagttaactgcag 25497542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 5344 - 5276
Alignment:
Q  39 tcggcggttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaa 108  Q
    ||||| ||||||||| |||||| ||||| | |||||||||||| ||||| | |||||||||| |||||||    
T  5344 tcggcagttaactaccgaggttttcctcggtagttaactgcagccggtt-tcaaattcttcggcagttaa 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 3951 - 3886
Alignment:
Q  46 ttaactactgaggttgtcctcagaagttaactgcagtcggttattaaattcttcgacagttaactg 111  Q
    |||||||| |||||| ||||| | |||||||||||| || || || ||||| ||||||||||||||    
T  3951 ttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcctcgacagttaactg 3886  T

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